View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_14 (Length: 415)
Name: NF5270_low_14
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 28946003 - 28945615
Alignment:
| Q |
18 |
ggaggtggtaaagagaattgtgatgatgctgaagaaaaggagaaattggaggaagagtgtgttggtgataaagaaaaggagaagttaccggaagagcgtg |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28946003 |
ggagatggtaaagagaattgtgatgatgctgaagaaaaggagaaattggaggaagagtgtgttggtgataaagaaaaggagaagttaccggaagagcgtg |
28945904 |
T |
|
| Q |
118 |
ttggtgatggagaagataaagagaaggagaaattaccggaagagtgtgttggtgacgaagaagataaagaaaaggagaaattacaggaagagtgtgttgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28945903 |
ttggtgatggagaagataaagagaaggagaaattaccggaagagtgtgttggtgacgaagaagataaagaaaaggataaattacaggaagagtgtgttgg |
28945804 |
T |
|
| Q |
218 |
tgatg---aagataaagagaaggagaaatcacaagagtgtgttggtgatggagttggtaaagagatttatgatgcgaaagaaaaagagaatttgaatggg |
314 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
28945803 |
tgatgaagaagataaagagaaggagaaatcacaagagtgtgttggtgatggagttggtaaaaagatttatgatgcgaaagaaaaggagaatttgaatggg |
28945704 |
T |
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| Q |
315 |
gatgagaattggcctgatttggagaagatgaatttaggtgagtggtttgatttcttggaagtttatttgccaaaacagatacatgatga |
403 |
Q |
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| T |
28945703 |
gatgagaattggcctgatttggagaagatgaatttaggtgagtggtttgatttcttggaagtttatttgccaaaacagatacatgatga |
28945615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 34823366 - 34822978
Alignment:
| Q |
18 |
ggaggtggtaaagagaattgtgatgatgctgaagaaaaggagaaattggaggaagagtgtgttggtgataaagaaaaggagaagttaccggaagagcgtg |
117 |
Q |
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| T |
34823366 |
ggagatggtaaagagaattgtgatgatgctgaagaaaaggagaaattggaggaagagtgtgttggtgataaagaaaaggagaagttaccggaagagcgtg |
34823267 |
T |
|
| Q |
118 |
ttggtgatggagaagataaagagaaggagaaattaccggaagagtgtgttggtgacgaagaagataaagaaaaggagaaattacaggaagagtgtgttgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34823266 |
ttggtgatggagaagataaagagaaggagaaattaacggaagagtgtgttggtgacgaagaagataaagaaaaggaaaaattacaggaagagtgtgttgg |
34823167 |
T |
|
| Q |
218 |
tgatg---aagataaagagaaggagaaatcacaagagtgtgttggtgatggagttggtaaagagatttatgatgcgaaagaaaaagagaatttgaatggg |
314 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
34823166 |
tgatgaagaagataaagagaagaagaaatcacaagagtgtgttggtgatggagttggtaaaaagatttatgatgcgaaagaaaaggagaatttgaatggg |
34823067 |
T |
|
| Q |
315 |
gatgagaattggcctgatttggagaagatgaatttaggtgagtggtttgatttcttggaagtttatttgccaaaacagatacatgatga |
403 |
Q |
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| T |
34823066 |
gatgagaattggcctgatttggagaagatgaatttaggtgagtggtttgatttcttggaagtttatttgccaaaacagatacatgatga |
34822978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 292 - 403
Target Start/End: Complemental strand, 34826158 - 34826047
Alignment:
| Q |
292 |
aagaaaaagagaatttgaatggggatgagaattggcctgatttggagaagatgaatttaggtgagtggtttgatttcttggaagtttatttgccaaaaca |
391 |
Q |
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||||||| ||||| | ||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34826158 |
aagaaaaggagaaatataattgggatgggaatatgcctgatttggagaagatgagtttaggtgagtggtttgatttcttggaggtttatttgccaaaaca |
34826059 |
T |
|
| Q |
392 |
gatacatgatga |
403 |
Q |
| |
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||||||||||| |
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| T |
34826058 |
aatacatgatga |
34826047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 34826184 - 34826144
Alignment:
| Q |
23 |
tggtaaagagaattgtgatgatgctgaagaaaaggagaaat |
63 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||||||| |
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| T |
34826184 |
tggtaaagagaactgtgatgaagctgaagaaaaggagaaat |
34826144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 42232648 - 42233048
Alignment:
| Q |
18 |
ggaggtggtaaagagaattgtgatgatgctgaagaaaaggagaaattggaggaagagtgtgttggtgataaaga---------aaaggagaagttaccgg |
108 |
Q |
| |
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|||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||| | |
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| T |
42232648 |
ggagatggtaaagagaattgtcatgatgctcaagaaacggagaaattggaggaagagtgtgttggtgatggagatggtaataaaaaggacaagttaccag |
42232747 |
T |
|
| Q |
109 |
aagagcgtgttggtgatggagaagataaagagaaggagaaattaccggaagagtgtgttggtgacgaagaagataaagaaaaggagaaattacaggaaga |
208 |
Q |
| |
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||| || |||||||||||||||||||||||| ||| | || ||| | |||||| |||| ||| | |||||||||| |||||||||||||||||||||| |
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| T |
42232748 |
aagggcatgttggtgatggagaagataaagaaaagaacaagttaacagaagagcacgttgatgatggagaagataaaaaaaaggagaaattacaggaaga |
42232847 |
T |
|
| Q |
209 |
gtgtgttg---gtgatgaagataaagagaaggagaaatcaca---agagtgtgttggtgatggagttggtaaagagatttatgatgcgaaagaaaaagag |
302 |
Q |
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|||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||| ||| ||||| ||| |
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| T |
42232848 |
gtgtgttgctggtgaagaagataaagagaaggagaaatcacaggaagagtgtgttggtgatggagatggtaaagagaattgtgatgtgaatgaaaaggag |
42232947 |
T |
|
| Q |
303 |
aatttgaatggggatgagaattggcctgatttggagaagatgaatttaggtgagtggtttgatttcttggaagtttatttgccaaaacagatacatgatg |
402 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
42232948 |
aatttgattggggatgagaattggcctgatttggagaagattagtttaggtgagtggtttgatttcttggaagtttgtttgccgaaacagatacatgatg |
42233047 |
T |
|
| Q |
403 |
a |
403 |
Q |
| |
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| |
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|
| T |
42233048 |
a |
42233048 |
T |
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