View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_16 (Length: 391)
Name: NF5270_low_16
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 29 - 369
Target Start/End: Original strand, 29144797 - 29145140
Alignment:
| Q |
29 |
agagatcacaaagataggttaagaaacatgggaaacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttat |
128 |
Q |
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| T |
29144797 |
agagatcacaaagataagttaagaaacatgggaaacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttat |
29144896 |
T |
|
| Q |
129 |
tagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacacattgttgc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29144897 |
tagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgc |
29144996 |
T |
|
| Q |
229 |
tgctatttgtgttgctccttttgcactctattttgaaaggtatttcattttcaattctatattttatttgcaaattatttcattaatctacctaag---t |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
29144997 |
tgctatttgtgttgctccttttgcactctattttgaaaggtaattcattttcaattctatattttatttgcaaattgtttcattaatctacctagtatat |
29145096 |
T |
|
| Q |
326 |
atggtactctttcccatgcacttcacttccctttttgttctgtg |
369 |
Q |
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| T |
29145097 |
atagtactctttcccatgcacttcacttccctttttgttctgtg |
29145140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 48 - 369
Target Start/End: Complemental strand, 29227157 - 29226833
Alignment:
| Q |
48 |
taagaaacatgggaaacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttattagtgcaaatatttgcaac |
147 |
Q |
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| T |
29227157 |
taagaaacatgggaaacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttattagtgcaaatatttgcaac |
29227058 |
T |
|
| Q |
148 |
tgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacacattgttgctgctatttgtgttgctcct |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29227057 |
tgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgctgctatttgtgttgctcct |
29226958 |
T |
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| Q |
248 |
tttgcactctattttgaaaggtatttcattttcaattctatattttatttgcaaattatttcattaatctacctaag---tatggtactctttcccatgc |
344 |
Q |
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| T |
29226957 |
tttgcactctattttgaaaggtaattcattttcaattctatattttatttgcaaattgttgcattaatctacctagtatatatagtactctttcccatgc |
29226858 |
T |
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| Q |
345 |
acttcacttccctttttgttctgtg |
369 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
29226857 |
actttacttccctttttgttctgtg |
29226833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 38852486 - 38852433
Alignment:
| Q |
222 |
ttgttgctgctatttgtgttgctccttttgcactctattttgaaaggtatttca |
275 |
Q |
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| T |
38852486 |
ttgttgctgctgtttgtgttgcacctttagcaatatattttgaaaggtaattca |
38852433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 62 - 269
Target Start/End: Complemental strand, 5307016 - 5306809
Alignment:
| Q |
62 |
aacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttattagtgcaaatatttgcaactgggatgcaacttc |
161 |
Q |
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||||||||||||| | |||||||||| |||||||||| || || ||||| |||||||| |||||||||||||||||||||| ||||||||| |||||| |
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| T |
5307016 |
aacacagagagaactcaaagtatgaaagaatggttcatctcttcccaagctcttcttagcatgttattagtgcaaatatttggaactgggatacaacttt |
5306917 |
T |
|
| Q |
162 |
tatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacacattgttgctgctatttgtgttgctccttttgcactctattt |
261 |
Q |
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||||||| ||||| |||||||| || |||| |||||||||||||| ||| |||||||| |||||||||||| ||||||| || || |||||||| ||||| |
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| T |
5306916 |
tatcaagggtcatcttggttcagggcactttcatttttgcactcaatgcatatcgacaaattgttgctgctgtttgtgtcgccccctttgcactttattt |
5306817 |
T |
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| Q |
262 |
tgaaaggt |
269 |
Q |
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|||||||| |
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| T |
5306816 |
tgaaaggt |
5306809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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