View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_2 (Length: 686)
Name: NF5270_low_2
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 14 - 625
Target Start/End: Complemental strand, 4188540 - 4187928
Alignment:
| Q |
14 |
agaagcaaaggttaaaggagaaaccgaacgacttgtggtggaagaatataaagatgacatcggtgggtcttttattgcaccaaatcaaccaaatagaaag |
113 |
Q |
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| T |
4188540 |
agaagaaaaggttaaaggagaaaccgaacgacttgtggtggaagaatacaaagatgacatcggtgggtcttttattgcaccaaatcaaccaaatagaaag |
4188441 |
T |
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| Q |
114 |
tgacatgcacatggtctctctatgtcttacaatgttatgttaactcagatattataagcttaatgaacacatttgactgcaaatatcccatttccgacac |
213 |
Q |
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| T |
4188440 |
tgacatgcacatggtctctctatgtcttacaatgttatgttaactcagatattataagcttaatgaacacatttgaatgcaaatatcccatttccgacac |
4188341 |
T |
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| Q |
214 |
atcactctggttgatttagaagcagtggaaaaaacgtaaaatttctcacaaatgtccaacaaatattgatgaaataaaatggattgagttattatggaat |
313 |
Q |
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| T |
4188340 |
atcactatggttgatttagaagaagtggaaaaaacgtaaaatttctcacaaatgtccaaaaaatattgatcaaataaaatggattgagtgagtatggaat |
4188241 |
T |
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| Q |
314 |
gtaacgtgtggactgtattttgttgattgcagttctctaaaaaggcataataccgatagtggagaatagaagaggtgtgtggacacacatctttggccac |
413 |
Q |
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| T |
4188240 |
gtaacgtgtggactgtattttgttgattccagttctctaaaaaggcataataccgatagtggagaatagaagaggtttgtggacacacatctttggccac |
4188141 |
T |
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| Q |
414 |
attgttcaatttttacagaatataatctttatgcacaatttg-tcnnnnnnntaatctttatgcataagtaacaaacaagcatttaaatttttctacatt |
512 |
Q |
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| T |
4188140 |
attgttcaatttttacagaatataatctttatgcacaatttgttaaaaaaaataatctttatgcataagtaacaaacaagcatttaaatttttctacatt |
4188041 |
T |
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| Q |
513 |
ataacaatagacattcgattatgccaaaagttaaaagaatatattcatttatgatcataatatacaaagagaatgcagtaacagtaccacaccaaataaa |
612 |
Q |
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| T |
4188040 |
ataacaatagacattcgattatgccaaaagttaaaagaatatattcatttatgatcataatatacaaagagactgcagtaacagtaccacaccaaataaa |
4187941 |
T |
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| Q |
613 |
gcattagattcta |
625 |
Q |
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| T |
4187940 |
gcattagattcta |
4187928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 649
Target Start/End: Complemental strand, 4186752 - 4186720
Alignment:
| Q |
617 |
tagattctatcacaattcacaatgagttgtata |
649 |
Q |
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| T |
4186752 |
tagattctatcacaattcacaatgacttgtata |
4186720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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