View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_20 (Length: 349)
Name: NF5270_low_20
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 612743 - 612861
Alignment:
| Q |
122 |
gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttccctataaatgctaacctaaattgaca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
612743 |
gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttccccataaatgctaacctaaattgaca |
612842 |
T |
|
| Q |
222 |
ttgaaattgtttttatgac |
240 |
Q |
| |
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||||||||||||||||||| |
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| T |
612843 |
ttgaaattgtttttatgac |
612861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 612886 - 612956
Alignment:
| Q |
264 |
aataatatcaatgtatctgaaatttggcattgaagctgctttatggccaaataattttgaaacaaaaaact |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
612886 |
aataatatcaatgtatctgaaatttggcattgaaactgctttatggccaaataattttgaaacaaaaaact |
612956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 612622 - 612663
Alignment:
| Q |
1 |
tcccattcacataaacaaacttttagtatcaatggtcgaatc |
42 |
Q |
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| T |
612622 |
tcccattcacataaacaaactttgagtatcaatggtcgaatc |
612663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 27203013 - 27202901
Alignment:
| Q |
122 |
gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttccctataaatgctaacctaaattgaca |
221 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
27203013 |
gaaataaatttttcaccaaagcattctaatgacatgtggtttcatggactaaactcaagcttctcatgcatttccccataaatgataacctaaattgaca |
27202914 |
T |
|
| Q |
222 |
ttgaaattgtttt |
234 |
Q |
| |
|
||||||||||||| |
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| T |
27202913 |
ttgaaattgtttt |
27202901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 27858160 - 27858048
Alignment:
| Q |
122 |
gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttccctataaatgctaacctaaattgaca |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
27858160 |
gaaataaatttttcaccaaagcattctaatgacatgtggtttcatggactaaactcaagcttctcatgcatttccccataaatgataacctaaattgaca |
27858061 |
T |
|
| Q |
222 |
ttgaaattgtttt |
234 |
Q |
| |
|
||||||||||||| |
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|
| T |
27858060 |
ttgaaattgtttt |
27858048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 27202873 - 27202807
Alignment:
| Q |
268 |
atatcaatgtatctgaaatttggcattgaagctgctttatggccaaataattttgaaacaaaaaact |
334 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
27202873 |
atatcaatgtaactgaaatttggcattgaaactgctttatggccaaataattttgaaacataaaact |
27202807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 27858020 - 27857954
Alignment:
| Q |
268 |
atatcaatgtatctgaaatttggcattgaagctgctttatggccaaataattttgaaacaaaaaact |
334 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
27858020 |
atatcaatgtaactgaaatttggcattgaaactgctttatggccaaataattttgaaacataaaact |
27857954 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 15652340 - 15652376
Alignment:
| Q |
6 |
ttcacataaacaaacttttagtatcaatggtcgaatc |
42 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
15652340 |
ttcacataaacaaactttgagtatcaatggtcgaatc |
15652376 |
T |
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