View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5270_low_21 (Length: 349)

Name: NF5270_low_21
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5270_low_21
NF5270_low_21
[»] chr8 (6 HSPs)
chr8 (41-333)||(26375305-26375604)
chr8 (41-333)||(18180067-18180373)
chr8 (41-333)||(5646425-5646729)
chr8 (214-333)||(23570900-23571018)
chr8 (208-332)||(42890803-42890926)
chr8 (208-332)||(42891231-42891354)
[»] chr7 (3 HSPs)
chr7 (41-333)||(1368329-1368631)
chr7 (41-333)||(24840594-24840897)
chr7 (262-333)||(1786241-1786311)
[»] chr6 (3 HSPs)
chr6 (207-333)||(14238867-14238992)
chr6 (209-332)||(8048503-8048625)
chr6 (210-333)||(18717756-18717877)
[»] chr1 (4 HSPs)
chr1 (208-333)||(23988004-23988128)
chr1 (208-332)||(13443527-13443648)
chr1 (209-333)||(28660287-28660410)
chr1 (43-96)||(28660136-28660189)
[»] chr2 (4 HSPs)
chr2 (208-329)||(33051978-33052098)
chr2 (214-333)||(31634511-31634629)
chr2 (214-333)||(27955722-27955840)
chr2 (258-333)||(33054024-33054098)
[»] chr5 (1 HSPs)
chr5 (215-333)||(19496848-19496965)
[»] scaffold0240 (1 HSPs)
scaffold0240 (208-333)||(16442-16565)
[»] chr3 (1 HSPs)
chr3 (208-332)||(43306338-43306461)
[»] chr4 (8 HSPs)
chr4 (208-307)||(22923516-22923614)
chr4 (208-307)||(22928169-22928267)
chr4 (208-307)||(22984448-22984546)
chr4 (208-307)||(22998036-22998134)
chr4 (208-258)||(22720690-22720740)
chr4 (46-117)||(16409841-16409912)
chr4 (112-173)||(16409877-16409938)
chr4 (208-253)||(22768329-22768374)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 41 - 333
Target Start/End: Complemental strand, 26375604 - 26375305
Alignment:
Q  41 ataccaagcgacttatgattagcgacactcaaattaactgacttaccgctagcaatgccgacaccaaatggcttatcactagaaatattaacatcaagtg 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  26375604 ataccaagcgacttatgattagcgacactcaaattaactgacttaccgctagcaatgccgacaccaaatggcttatcactagcaatattaacat-aagtg 26375506  T
Q  141 gcttgtttttatcaacattaacattaagataccatagaattatcaaaacagaatgtttaacaatatc---------cttacgcgagttacctgccattct 231  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  26375505 gcttgtttttatcaacattaacaataagataccatagaattatcaaaacagaatgtttaacaatatccttaatcgtcttacgcgagttacctgccattct 26375406  T
Q  232 ggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagagattttaaactcgtagtaatcatc 331  Q
      ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||| |||||||||||    
T  26375405 ataagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaac-aaaacggacaatgatattttgaatcagagattttaaactcatagtaatcatc 26375307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 41 - 333
Target Start/End: Original strand, 18180067 - 18180373
Alignment:
Q  41 ataccaagcgacttatgattagcgacactcaaattaactgacttaccgctagcaatgccgacaccaaatggcttatcactagaaatattaacatcaagtg 140  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||    
T  18180067 ataccaagcgacttctgattagcgacactcaaattaactgacttaccgctagcaatactaacaccaaatggcttatcactagcaatattaacatcaagtg 18180166  T
Q  141 gcttgtttttatcaacattaacattaagataccatag------aattatcaaaacagaatgtttaacaatatc---------cttacgcgagttacctgc 225  Q
    ||||||||||||||||||||||||||||||||||| |      | |||||||||||||||||||  |||||||         ||||||||||||||||||    
T  18180167 gcttgtttttatcaacattaacattaagataccattgcatataagttatcaaaacagaatgtttggcaatatccttaatcgtcttacgcgagttacctgc 18180266  T
Q  226 cattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagagattttaaactcgtagta 325  Q
    |||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| ||||||  |||| ||||||||||||||||||||    
T  18180267 cattctggaagcatgtctcaaaaggtcagtaaaggagtaatatttgttgtaac-aaaacggacaacgatatttcaaatcggagattttaaactcgtagta 18180365  T
Q  326 atcatcct 333  Q
    ||||||||    
T  18180366 atcatcct 18180373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 41 - 333
Target Start/End: Original strand, 5646425 - 5646729
Alignment:
Q  41 ataccaagcgacttatgattagcgacactcaaattaactgacttaccgctagcaatgccgacaccaaatggcttatcactagaaatattaacatcaagtg 140  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||| |||||||||  |||||||| || || ||||||||||||| |||    
T  5646425 ataccaagcgacttctgattagcgacactcaacttaactgacttatcgcaagcaataccgacaccaggtggcttatgac-agcaatattaacatcaggtg 5646523  T
Q  141 gcttgtttttatcaacattaacattaagataccataga------attatcaaaacagaatgtttaacaatatc---------cttacgcgagttacctgc 225  Q
    |||| |||| ||| |  |||||||||||||||| | ||      |||||||||||||| |||||  |||||||         ||||||||||||||||||    
T  5646524 gcttattttcatcgattttaacattaagatacctttgaatatacattatcaaaacagagtgtttggcaatatctttatccgtcttacgcgagttacctgc 5646623  T
Q  226 cattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagagattttaaactcgtagta 325  Q
    |||| || || ||| |||||||||||| ||||| |||||||||||| |||||| |||||||||||| || | | ||||| ||||||||||||| ||||||    
T  5646624 cattatgaaatcat-tctcaaaaggtcggtcaaagagtaatctttgttgtaac-aaaacggacaacgatgtatcgaatcggagattttaaacttgtagta 5646721  T
Q  326 atcatcct 333  Q
    ||||||||    
T  5646722 atcatcct 5646729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 214 - 333
Target Start/End: Complemental strand, 23571018 - 23570900
Alignment:
Q  214 cgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagagatttt 313  Q
    |||||||| | | |||||||||||||||||||||||||| | |||||||||||||||| |||||| |||||||||||| |||| ||||||| |||||||     
T  23571018 cgagttacgtacaattctggaagcatgtctcaaaaggtcggacaaggagtaatctttgctgtaac-aaaacggacaacgatatattgaatcggagatttc 23570920  T
Q  314 aaactcgtagtaatcatcct 333  Q
    ||| | ||||||||||||||    
T  23570919 aaatttgtagtaatcatcct 23570900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 208 - 332
Target Start/End: Complemental strand, 42890926 - 42890803
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcaga 307  Q
    |||||| |||||| | || |||||||||||||||||||||||||| | |||||||||||||||| |||||| |||||||||||| ||||   ||||| ||    
T  42890926 cttacgtgagttatcagctattctggaagcatgtctcaaaaggtcggacaaggagtaatctttgttgtaac-aaaacggacaacgatataccgaatcgga 42890828  T
Q  308 gattttaaactcgtagtaatcatcc 332  Q
    ||||| || ||||||||||||||||    
T  42890827 gatttcaatctcgtagtaatcatcc 42890803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 208 - 332
Target Start/End: Original strand, 42891231 - 42891354
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcaga 307  Q
    |||||| |||||| | || |||||||||||||||||||||||||| | | |||||||||||||| |||||| |||||||||||| ||||   ||||| ||    
T  42891231 cttacgtgagttatcagctattctggaagcatgtctcaaaaggtcggactaggagtaatctttgttgtaac-aaaacggacaacgatataccgaatcgga 42891329  T
Q  308 gattttaaactcgtagtaatcatcc 332  Q
    ||||| || ||||||||||||||||    
T  42891330 gatttcaatctcgtagtaatcatcc 42891354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 41 - 333
Target Start/End: Complemental strand, 1368631 - 1368329
Alignment:
Q  41 ataccaagcgacttatgattagcgacactcaaattaactgacttaccgctagcaatgccgacaccaaatggcttatcactagaaatattaacatcaagtg 140  Q
    |||||||||||||| |||| | |||||||||||||||||| ||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||    
T  1368631 ataccaagcgacttctgatcaacgacactcaaattaactggcttaccgctagcaataccgacaccaagtggct-atcactagcaatattaacatcaagtg 1368533  T
Q  141 gcttgtttttatcaacattaacattaagataccatagaa------ttatcaaaacagaatgtttaacaatatc---------cttacgcgagttacctgc 225  Q
    |||| ||||||||||||||||||||| |||||| |||||      |||||||||| ||||||||  |||||||         ||||||| ||||||||||    
T  1368532 gcttatttttatcaacattaacattatgataccttagaatgtatgttatcaaaactgaatgtttggcaatatctttaaccgtcttacgcaagttacctgc 1368433  T
Q  226 cattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagagattttaaactcgtagta 325  Q
     |||||  ||||||||||||||||||| |||||||   |||| ||| |||||| |||||||||||| |||| | ||||| ||||||||||||||||| |     
T  1368432 aattctaaaagcatgtctcaaaaggtcggtcaagg---aatccttgttgtaac-aaaacggacaacgatatatcgaatcggagattttaaactcgtaatg 1368337  T
Q  326 atcatcct 333  Q
    ||||||||    
T  1368336 atcatcct 1368329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 333
Target Start/End: Complemental strand, 24840897 - 24840594
Alignment:
Q  41 ataccaagcgacttatgattagcgacactcaaattaactgacttaccgctagcaatgccgacaccaaatggcttatcactagaaatattaacatcaagtg 140  Q
    |||||||| ||||| ||||||| ||||||||| |||| ||| |||||||||||||| | |||||||  | | |||||||||| ||||||||||||| |||    
T  24840897 ataccaagtgacttctgattagtgacactcaacttaattgatttaccgctagcaatacagacaccaggtagtttatcactagcaatattaacatcaggtg 24840798  T
Q  141 gcttgtttttatcaacattaacattaagatacc-----ataga-attatcaaaacagaatgtttaacaatatc---------cttacgcgagttacctgc 225  Q
    |||| |||||||| || ||||||||||||||||     ||| | ||||| |||||| |||  |||||||||||          ||| ||||||||||| |    
T  24840797 gcttatttttatcgactttaacattaagataccttttaatatatattattaaaacataat-attaacaatatctttaaccgttttatgcgagttacctac 24840699  T
Q  226 cattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagagattttaaactcgtagta 325  Q
    |||||| |||||||||||||||||||| ||||||||||||  |||| ||||| ||||||||||||| | |  | |||| |||||||||||||| ||||||    
T  24840698 cattcttgaagcatgtctcaaaaggtcggtcaaggagtaacttttgttgtaa-aaaaacggacaacgaca--tcgaattagagattttaaacttgtagta 24840602  T
Q  326 atcatcct 333  Q
    ||||||||    
T  24840601 atcatcct 24840594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 1786311 - 1786241
Alignment:
Q  262 gtaatctttggtgtaacaaaaacggacaacaatattttgaatcagagattttaaactcgtagtaatcatcct 333  Q
    |||||||||| |||||||||| ||| ||||||||||| |||| |||||||||||| | ||||||||||||||    
T  1786311 gtaatctttgttgtaacaaaa-cgggcaacaatatttcgaattagagattttaaaattgtagtaatcatcct 1786241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 207 - 333
Target Start/End: Complemental strand, 14238992 - 14238867
Alignment:
Q  207 ccttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcag 306  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| | | ||||||||||| |||| | |||||||    
T  14238992 ccttacgcgagttacctgccattctagaagcatgtctcaaaaggtcggtcaaggagtaatctttgttgtca-agaaacggacaacgatatatcgaatcag 14238894  T
Q  307 agattttaaactcgtagtaatcatcct 333  Q
    |||||||||||| ||||||||||||||    
T  14238893 agattttaaactagtagtaatcatcct 14238867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 209 - 332
Target Start/End: Original strand, 8048503 - 8048625
Alignment:
Q  209 ttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagag 308  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||| |||| |  | |  |||    
T  8048503 ttacgtgagttacctgctattctggaagcatgtctcaaaaggtcggtcaaggagtaatctttgttgtaacaaaa-cgaacaacgatatatcaatttggag 8048601  T
Q  309 attttaaactcgtagtaatcatcc 332  Q
    |||||||||| |||||||||||||    
T  8048602 attttaaacttgtagtaatcatcc 8048625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 333
Target Start/End: Original strand, 18717756 - 18717877
Alignment:
Q  210 tacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagaga 309  Q
    |||| |||||| || | |||||||||||| |||| |||||| | ||||| |||||||||||| |||||||||| |||||||| |||| | ||||| ||||    
T  18717756 tacgtgagttatctacaattctggaagcacgtctaaaaagg-cggtcaaagagtaatctttgttgtaacaaaa-cggacaacgatatatggaatcggaga 18717853  T
Q  310 ttttaaactcgtagtaatcatcct 333  Q
    ||| ||| | |||| |||||||||    
T  18717854 tttcaaatttgtagaaatcatcct 18717877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 208 - 333
Target Start/End: Complemental strand, 23988128 - 23988004
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcaga 307  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| ||||| |||| | |||| |||    
T  23988128 cttacacgagttacctgccattctggaagcatgtctcaaaaggtcggtcaaggagtaatctttgttgtaac-aaaacgtacaacgatatatcgaattaga 23988030  T
Q  308 gattttaaactcgtagtaatcatcct 333  Q
    ||||||||||| ||||||||||||||    
T  23988029 gattttaaacttgtagtaatcatcct 23988004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 208 - 332
Target Start/End: Original strand, 13443527 - 13443648
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcaga 307  Q
    |||||| ||||||||||  |||| ||||||||||||||||||||| |  ||||||||||||||| |||||| |||| ||||||| |||| | ||||||||    
T  13443527 cttacgtgagttacctgatattccggaagcatgtctcaaaaggtcgg--aaggagtaatctttgttgtaac-aaaatggacaacgatatatcgaatcaga 13443623  T
Q  308 gattttaaactcgtagtaatcatcc 332  Q
    ||||| ||| | |||||||||||||    
T  13443624 gatttcaaatttgtagtaatcatcc 13443648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 333
Target Start/End: Original strand, 28660287 - 28660410
Alignment:
Q  209 ttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagag 308  Q
    ||||| ||||||||||||| |||| |||||||| |||||||||  ||||||||||||| |||| || ||| |||| ||||||| |||| |  ||||||||    
T  28660287 ttacgtgagttacctgccaatctgaaagcatgtttcaaaaggttggtcaaggagtaatttttgttgcaac-aaaatggacaacgatatatcaaatcagag 28660385  T
Q  309 attttaaactcgtagtaatcatcct 333  Q
    |||||||||| |||||||| |||||    
T  28660386 attttaaacttgtagtaattatcct 28660410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 28660136 - 28660189
Alignment:
Q  43 accaagcgacttatgattagcgacactcaaattaactgacttaccgctagcaat 96  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  28660136 accaagcgacttctgatttgcgacactcaaattaactgacttaccgctagcaat 28660189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 33052098 - 33051978
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcaga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| || ||| |||| ||| ||| |||| | ||||||||    
T  33052098 cttacgcgagttacctgccattctggaagcatgtctcaaaaggttggtcaaggagtaatctttgttgcaac-aaaatggataacgatatatcgaatcaga 33052000  T
Q  308 gattttaaactcgtagtaatca 329  Q
    ||||||||||| ||||||||||    
T  33051999 gattttaaacttgtagtaatca 33051978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 214 - 333
Target Start/End: Complemental strand, 31634629 - 31634511
Alignment:
Q  214 cgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagagatttt 313  Q
    |||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |||||| |||| ||||||| |||| | |||||||||||||     
T  31634629 cgagttacctgcaattctggaagcatgtctcaaaaggtcggacaaggagtaatctttgttgtaac-aaaatggacaacgatatatcgaatcagagatttc 31634531  T
Q  314 aaactcgtagtaatcatcct 333  Q
    ||| | ||||||||||||||    
T  31634530 aaatttgtagtaatcatcct 31634511  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 333
Target Start/End: Original strand, 27955722 - 27955840
Alignment:
Q  214 cgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagagatttt 313  Q
    |||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||| |||||| |||||||||||| |||| | ||||| |||||||     
T  27955722 cgagttacctgcaattctgaaagcatgtctcaaaaggccggtcaaggagtaatctttgttgtaac-aaaacggacaacgatatatcgaatcggagatttc 27955820  T
Q  314 aaactcgtagtaatcatcct 333  Q
    ||| | ||| ||||||||||    
T  27955821 aaatttgtaataatcatcct 27955840  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 333
Target Start/End: Original strand, 33054024 - 33054098
Alignment:
Q  258 aggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagagattttaaactcgtagtaatcatcct 333  Q
    |||||||||||||| | || ||||| |||||||| |||| | ||||||||||||||||||||||||||||||||||    
T  33054024 aggagtaatctttgttatagcaaaa-cggacaacgatatatcgaatcagagattttaaactcgtagtaatcatcct 33054098  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 215 - 333
Target Start/End: Original strand, 19496848 - 19496965
Alignment:
Q  215 gagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcagagatttta 314  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||| ||||||||||| |||||| ||||| |||| | |||||| |||||  ||||||||    
T  19496848 gagttacctgctattctggaagcatgtctcagaaggtcggtcaagaagtaatctttgttgtaac-aaaacagacagcgatatttcgaatcgtagatttta 19496946  T
Q  315 aactcgtagtaatcatcct 333  Q
    ||||||| |||||||||||    
T  19496947 aactcgttgtaatcatcct 19496965  T

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Target: scaffold0240 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 333
Target Start/End: Complemental strand, 16565 - 16442
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcaga 307  Q
    |||||||||||||||||||||| || || ||| |||||||||||| ||||| |||||||||||| ||||||||||  |||||||||||| | |||||  |    
T  16565 cttacgcgagttacctgccattatgaaatcat-tctcaaaaggtcggtcaaagagtaatctttgttgtaacaaaat-ggacaacaatatatcgaatctaa 16468  T
Q  308 gattttaaactcgtagtaatcatcct 333  Q
    ||||||||||| ||||||||||||||    
T  16467 gattttaaacttgtagtaatcatcct 16442  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 208 - 332
Target Start/End: Original strand, 43306338 - 43306461
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcaga 307  Q
    |||||| |||||| | || ||||| |||||||||||||| ||||||| |||||||||||||||| |||||| |||||||||||| ||||   ||||||||    
T  43306338 cttacgtgagttatcagctattctagaagcatgtctcaataggtcagacaaggagtaatctttgttgtaac-aaaacggacaacgatataccgaatcaga 43306436  T
Q  308 gattttaaactcgtagtaatcatcc 332  Q
    ||||| || ||||||||||||||||    
T  43306437 gatttcaatctcgtagtaatcatcc 43306461  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 22923614 - 22923516
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcaga 307  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||| || ||| |||||||||||| ||||  |||||||||    
T  22923614 cttacgcgagttacctaccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgcaac-aaaacggacaacgatataatgaatcaga 22923516  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 22928267 - 22928169
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcaga 307  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||| || ||| |||||||||||| ||||  |||||||||    
T  22928267 cttacgcgagttacctaccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgcaac-aaaacggacaacgatataatgaatcaga 22928169  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 22984546 - 22984448
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcaga 307  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||| || ||| |||||||||||| ||||  |||||||||    
T  22984546 cttacgcgagttacctaccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgcaac-aaaacggacaacgatataatgaatcaga 22984448  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 22998134 - 22998036
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaaacggacaacaatattttgaatcaga 307  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||| || ||| |||||||||||| ||||  |||||||||    
T  22998134 cttacgcgagttacctaccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgcaac-aaaacggacaacgatataatgaatcaga 22998036  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 22720690 - 22720740
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtcaa 258  Q
    ||||||| |||||||| |||||||||||||||||||||||||||| |||||    
T  22720690 cttacgcaagttacctaccattctggaagcatgtctcaaaaggtcggtcaa 22720740  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 16409841 - 16409912
Alignment:
Q  46 aagcgacttatgattagcgacactcaaattaactgacttaccgctagcaatgccgacaccaaatggcttatc 117  Q
    ||||||||| | |||||||||||||||||||||||||||| | |||||||| |  ||||||  |||||||||    
T  16409841 aagcgacttctcattagcgacactcaaattaactgacttatcactagcaatactaacaccaggtggcttatc 16409912  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 16409877 - 16409938
Alignment:
Q  112 cttatcactagaaatattaacatcaagtggcttgtttttatcaacattaacattaagatacc 173  Q
    ||||||||||| |||| ||||| || ||||||| | ||||||||| ||||||||||||||||    
T  16409877 cttatcactagcaatactaacaccaggtggcttatctttatcaactttaacattaagatacc 16409938  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 22768329 - 22768374
Alignment:
Q  208 cttacgcgagttacctgccattctggaagcatgtctcaaaaggtca 253  Q
    ||||||||||||| || |||||||| ||||| ||||||||||||||    
T  22768329 cttacgcgagttatctaccattctgaaagcaagtctcaaaaggtca 22768374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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