View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_22 (Length: 342)
Name: NF5270_low_22
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_22 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 1996009 - 1995668
Alignment:
| Q |
16 |
agcataacatagattggtttcataataaatcctaaa--------tatttaaggatactctacagacacaatatgagctaaaaatc----ctaacttcgat |
103 |
Q |
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| T |
1996009 |
agcataacatagattggtttcataataaatcctaaaaatctaaatatttaaggatactctacagacacaatatgagctaaaatccttaactaacttcgat |
1995910 |
T |
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| Q |
104 |
ggatttctttaaagaaatgttaaaactcacgtgattttctacattaatatgttattgtactcacgcgatttcaatcgtctattcttaatcatacaattca |
203 |
Q |
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| T |
1995909 |
tgatttctttaaagaaatgttaaaactcacatgattttctacattaatatgttattgtactcacgcgatttcaatcgtctattcttaatcatacaattca |
1995810 |
T |
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| Q |
204 |
tattatgagtttacatatcataaatctaaacatacaagttaaaatatacacaatcatatcatatcaaaattgaatggttcatatcaacaccaa---tata |
300 |
Q |
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| T |
1995809 |
tattatgagtttacatatcataaatctaaacatacaagtcaaaatatacacaatcatatcatatcaaaattgaatggttcatatcaacaccaatattata |
1995710 |
T |
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| Q |
301 |
aatgcacaattgcacataatttatttcctcaaagtcatggtc |
342 |
Q |
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| T |
1995709 |
aatgcacaattgcacataatttatttcctcaaagtcatggtc |
1995668 |
T |
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