View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_23 (Length: 333)
Name: NF5270_low_23
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_23 |
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| [»] scaffold0068 (2 HSPs) |
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Alignment Details
Target: scaffold0068 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 67 - 219
Target Start/End: Complemental strand, 30148 - 30002
Alignment:
| Q |
67 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcatacatagtcatagtttaaagcaagaaaacttgctgtggcaannn |
166 |
Q |
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| T |
30148 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcatacatagtcagagtttaaagcaagaaaacttgctgcggcaa--- |
30052 |
T |
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| Q |
167 |
nnnnnnnnngctggaattggaaagtaccaacttgatattaaagcaagaaaact |
219 |
Q |
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| T |
30051 |
---atatatgctggaattggaaagtaccaacttgatattaaagcaagaaaact |
30002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 26964 - 26898
Alignment:
| Q |
30 |
gatttgttagtacgtgcatttcaacctctctagtttcactatatcaataatgtacgtaacttcatca |
96 |
Q |
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| T |
26964 |
gatttgttagtatgtgcatttgaaccactctagtttcactatatcaataatgtacataacttcatca |
26898 |
T |
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Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 67 - 219
Target Start/End: Original strand, 21683762 - 21683908
Alignment:
| Q |
67 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcatacatagtcatagtttaaagcaagaaaacttgctgtggcaannn |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
21683762 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcatacatagtcagagtttaaagcaagaaaacttgctgcggcaa--- |
21683858 |
T |
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| Q |
167 |
nnnnnnnnngctggaattggaaagtaccaacttgatattaaagcaagaaaact |
219 |
Q |
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| T |
21683859 |
---atatatgctggaattggaaagtaccaacttgatattaaagcaagaaaact |
21683908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 42727127 - 42727241
Alignment:
| Q |
30 |
gatttgttagtacgtgcatttcaacctctctagtttcactatatcaataatgtacgtaacttcatcatggtagtgttaaaacctacta---aatcataca |
126 |
Q |
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| T |
42727127 |
gatttgttagtatgtgcatttgaaccactatagtttcactatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactattgaataataca |
42727226 |
T |
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| Q |
127 |
tagtcatagtttaaa |
141 |
Q |
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||||| |||||||| |
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| T |
42727227 |
aagtcagagtttaaa |
42727241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 21686946 - 21687012
Alignment:
| Q |
30 |
gatttgttagtacgtgcatttcaacctctctagtttcactatatcaataatgtacgtaacttcatca |
96 |
Q |
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| T |
21686946 |
gatttgttagtatgtgcatttgaaccactctagtttcactatatcaataatgtacataacttcatca |
21687012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 42597342 - 42597290
Alignment:
| Q |
14 |
atatactgttttattagatttgttagtacgtgcatttcaacctctctagtttc |
66 |
Q |
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| T |
42597342 |
atatactgttttactagatttgttagtacgtgcatttcaacctctctagtttc |
42597290 |
T |
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