View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5270_low_24 (Length: 330)

Name: NF5270_low_24
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5270_low_24
NF5270_low_24
[»] chr5 (3 HSPs)
chr5 (1-324)||(5399818-5400145)
chr5 (172-205)||(38749571-38749604)
chr5 (168-212)||(14818307-14818351)
[»] scaffold0004 (1 HSPs)
scaffold0004 (171-208)||(101015-101052)
[»] chr6 (3 HSPs)
chr6 (172-205)||(17168912-17168945)
chr6 (182-223)||(13815057-13815098)
chr6 (163-203)||(9617454-9617494)
[»] chr7 (2 HSPs)
chr7 (163-203)||(19930940-19930980)
chr7 (169-205)||(30606069-30606105)
[»] chr4 (3 HSPs)
chr4 (168-212)||(32915610-32915654)
chr4 (168-212)||(5555136-5555180)
chr4 (168-208)||(25390890-25390930)
[»] chr8 (2 HSPs)
chr8 (165-212)||(14692470-14692517)
chr8 (168-208)||(18964192-18964232)
[»] chr3 (2 HSPs)
chr3 (170-222)||(41319316-41319369)
chr3 (168-208)||(35222953-35222993)
[»] scaffold0123 (1 HSPs)
scaffold0123 (163-203)||(44524-44564)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 5400145 - 5399818
Alignment:
Q  1 ccatcaaaacacgtgcaataacccatacactttctttattgtcgtagtaattgagttctagtagtactactgtattgattgatcattaatagacatgtcc 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5400145 ccatcaaaatacgtgcaataacccatacactttctttattgtcgttgtaattgagttctagtagtactactgtattgattgatcattaatcgacatgtcc 5400046  T
Q  101 atatacctaataaacacacgtactcttcggattatatgtgtctcagtatcatatacatatat----acgataccgacacatatagttacattgaattatg 196  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||    ||||||| || ||||||| |||||||||||||||    
T  5400045 atatacctaataaacacacgtactcttcagattagatgtgtctcagtatcatatatatatatatacacgatactgaaacatataattacattgaattatg 5399946  T
Q  197 tcattttttaaattatcattgatgtcagacatatatatgtcgtgtcttgtgtccgtatccgaatctgtgattgatggtatatatatagcttactatgtat 296  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  5399945 tcattttttaaattattattgatgtcagacatatatatgtcgtgtcttgtgtccgtatccgagtttgtgattgatggtatatatatagcttactatgtat 5399846  T
Q  297 ctcttttttcaggaacgtttcatctcac 324  Q
    ||||||||||||||||||||||| ||||    
T  5399845 ctcttttttcaggaacgtttcatatcac 5399818  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 38749571 - 38749604
Alignment:
Q  172 acacatatagttacattgaattatgtcatttttt 205  Q
    ||||||||| ||||||||||||||||||||||||    
T  38749571 acacatataattacattgaattatgtcatttttt 38749604  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 14818307 - 14818351
Alignment:
Q  168 accgacacatatagttacattgaattatgtcattttttaaattat 212  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||    
T  14818307 accgacacatatgtttacattgaattatgtcatttctcaaattat 14818351  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 101052 - 101015
Alignment:
Q  171 gacacatatagttacattgaattatgtcattttttaaa 208  Q
    |||||||||| |||||||||||||||||||||||||||    
T  101052 gacacatataattacattgaattatgtcattttttaaa 101015  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 17168945 - 17168912
Alignment:
Q  172 acacatatagttacattgaattatgtcatttttt 205  Q
    ||||||||||||||||||||||||||||||||||    
T  17168945 acacatatagttacattgaattatgtcatttttt 17168912  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 13815057 - 13815098
Alignment:
Q  182 ttacattgaattatgtcattttttaaattatcattgatgtca 223  Q
    ||||||| ||||||||||||||||||||||| |||| |||||    
T  13815057 ttacattcaattatgtcattttttaaattattattggtgtca 13815098  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 9617494 - 9617454
Alignment:
Q  163 acgataccgacacatatagttacattgaattatgtcatttt 203  Q
    |||| ||||||||||||| |||||||||||||||| |||||    
T  9617494 acgacaccgacacatataattacattgaattatgtgatttt 9617454  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 19930940 - 19930980
Alignment:
Q  163 acgataccgacacatatagttacattgaattatgtcatttt 203  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  19930940 acgatatcgacacatataattacattgaattatgtcatttt 19930980  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 30606069 - 30606105
Alignment:
Q  169 ccgacacatatagttacattgaattatgtcatttttt 205  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30606069 ccgacacatatggttacattgaattatgtcatttttt 30606105  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 32915610 - 32915654
Alignment:
Q  168 accgacacatatagttacattgaattatgtcattttttaaattat 212  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||    
T  32915610 accgaaacatataattacattgaattatgtgattttttaaattat 32915654  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 5555136 - 5555180
Alignment:
Q  168 accgacacatatagttacattgaattatgtcattttttaaattat 212  Q
    ||||||||||||| ||||||| |||||| | ||||||||||||||    
T  5555136 accgacacatataattacattaaattatcttattttttaaattat 5555180  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 25390890 - 25390930
Alignment:
Q  168 accgacacatatagttacattgaattatgtcattttttaaa 208  Q
    |||||||||||| |||| |||||||||||||||||| ||||    
T  25390890 accgacacatatggttatattgaattatgtcattttctaaa 25390930  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 14692517 - 14692470
Alignment:
Q  165 gataccgacacatatagttacattgaattatgtcattttttaaattat 212  Q
    ||||||||||| |||||||||| ||||||||||||||| | |||||||    
T  14692517 gataccgacacctatagttacactgaattatgtcatttctcaaattat 14692470  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 18964232 - 18964192
Alignment:
Q  168 accgacacatatagttacattgaattatgtcattttttaaa 208  Q
    ||||||||||||| |||||||||||||||| ||||| ||||    
T  18964232 accgacacatataattacattgaattatgtgattttctaaa 18964192  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 41319316 - 41319369
Alignment:
Q  170 cgacacatatagttacattgaattatgtcatttttt-aaattatcattgatgtc 222  Q
    ||||||||| | |||||||||||||||||||||||| ||||||| |||| ||||    
T  41319316 cgacacatacaattacattgaattatgtcattttttcaaattattattggtgtc 41319369  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 35222993 - 35222953
Alignment:
Q  168 accgacacatatagttacattgaattatgtcattttttaaa 208  Q
    ||||||||||||| |||||||||||||||| ||||| ||||    
T  35222993 accgacacatataattacattgaattatgtgattttctaaa 35222953  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 44524 - 44564
Alignment:
Q  163 acgataccgacacatatagttacattgaattatgtcatttt 203  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  44524 acgataccgacacatataattacactgaattatgtgatttt 44564  T

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