View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_26 (Length: 316)
Name: NF5270_low_26
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 52876970 - 52876686
Alignment:
| Q |
16 |
atcaaatagattcaataaatatctctatcatgagtgagttgtaaaaatcatta--gagacaacaacaaaccatttttcaatgcgttgttgtagaaagttt |
113 |
Q |
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| T |
52876970 |
atcaaatagattcaataaatatctctatcatgagtgagttgtaaaaatcattattgagacaacaa-aaaccatttttcaatgcgttgttgtagaaagttt |
52876872 |
T |
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| Q |
114 |
gttatggaatcaagcaacgtataaagtttgtcaatgacaatacacaatcacaagaaactttgttggaaaaaatgcactatatgtgtttgtgcatacgtca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52876871 |
gttatggaatcaagcaacgtataaagtttgtcaatgacaatacacaatcacaagaaactttgttggaaaaaatgcactatatgtgtttgtgcatacgtca |
52876772 |
T |
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| Q |
214 |
acatgttcatttttaagtatgtagacaagagggtgaaatgtataaaaaagaaaatcaatggaagtatgaagtcatcaacaaagtta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52876771 |
acatgttcatttttaagtatgtagacaagagggtgaaatgtataaaaaagaaaatcaatgaaagtatgaagtcatcaacaaagtta |
52876686 |
T |
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