View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_27 (Length: 307)
Name: NF5270_low_27
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 54 - 288
Target Start/End: Original strand, 25325205 - 25325448
Alignment:
| Q |
54 |
aagaacaaacttggtaagctgaagttgaagcaccaaacacaaagtcagaagggaattcatctctgctcaaaccataagcactagggaggaggattactag |
153 |
Q |
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| T |
25325205 |
aagaacaaacttggtaagctgaagttgaagcaccaaacacaaagtaagaagggaattcatctctgctcaaaccataagcactagggaggaggattactag |
25325304 |
T |
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| Q |
154 |
taacactactactgcaa---------cattcaaagcaaacaccttcaagatcaaagccatattaatttcttctgttttcattgcgttaatcaaacttata |
244 |
Q |
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| T |
25325305 |
taacactactgcaacatttagtaattctttcaatgctaacaccttcaagatcaaagccatattaatttcttctgttttcattgcgttaatcaaacttata |
25325404 |
T |
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| Q |
245 |
tgacatacattattttattcagttcaggttatttaagaatatac |
288 |
Q |
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| T |
25325405 |
tgacatacattattttattcagttcaggttatttaagaatatac |
25325448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 25330531 - 25330640
Alignment:
| Q |
51 |
gagaagaacaaacttggtaagctgaagttgaagcaccaaacacaaagtcagaagggaattcatctctgctcaaaccataagcactagggaggaggattac |
150 |
Q |
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| T |
25330531 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcagaagggaattcatctttgttcaaactataagcactagagaaaaggattac |
25330630 |
T |
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| Q |
151 |
tagtaacact |
160 |
Q |
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| T |
25330631 |
tactaacact |
25330640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 9988548 - 9988451
Alignment:
| Q |
52 |
agaagaacaaacttggtaagctgaagttgaagcaccaaacacaaagtcag-aagggaattcatctctgctcaaaccataagcactagggaggaggatt |
148 |
Q |
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| T |
9988548 |
agaagaacaaaattggtaagctgaagttgatacaacaaacacaaagttggaaagggaactcatctttgttcaaactataagcacaaagaaggaggatt |
9988451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 21725416 - 21725318
Alignment:
| Q |
51 |
gagaagaacaaacttggtaagctgaagttgaagcaccaaacacaaagtcag-aagggaattcatctctgctcaaaccataagcactagggaggaggatt |
148 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| |||||| || |||||| |||||||| | | ||||||||| |
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| T |
21725416 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatctttgttcaaactataagcacaaagaaggaggatt |
21725318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 21805141 - 21805043
Alignment:
| Q |
51 |
gagaagaacaaacttggtaagctgaagttgaagcaccaaacacaaagtcag-aagggaattcatctctgctcaaaccataagcactagggaggaggatt |
148 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| |||||| || |||||| |||||||| | | ||||||||| |
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| T |
21805141 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatctttgttcaaactataagcacaaagaaggaggatt |
21805043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 14331513 - 14331448
Alignment:
| Q |
51 |
gagaagaacaaacttggtaagctgaagttgaagcaccaaacacaaagtcag-aagggaattcatct |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| |||||| |
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| T |
14331513 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatct |
14331448 |
T |
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