View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5270_low_28 (Length: 304)

Name: NF5270_low_28
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5270_low_28
NF5270_low_28
[»] chr7 (1 HSPs)
chr7 (1-296)||(41185619-41185912)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 41185912 - 41185619
Alignment:
Q  1 aaaggtgcaacaatctcatgaattcatggattgttaactc--gttgttccgcctatatattgcacaagtcgtcttgttagaggatactactccatccagt 98  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41185912 aaaggtgcaacaatctcatgaattcatggattgttaactcaggttgctccgcctatatattgcacaagtcatcttgttagaggatactactccatccagt 41185813  T
Q  99 tgacaaccggttattataaccagttacatttaagtaatagatgatagaaagttagttataacagattacttgtgttacaagtcacctagctttattccct 198  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41185812 tgacaaccggttattataaccagttacatttaagtcatagatgatagaaagttagttataacagattacttgtgttacaagtcacctagctttattcact 41185713  T
Q  199 nnnnnnnnnnnnnnnatgattcttgtaattaactttcagttcatgccattcatttcaatatatgatatttctttgtttacctctctgattttcatctc 296  Q
                   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41185712 ----tgtgtgtgtgtatgattcttgtaattaactttcagttcatgccattcatttcaatatatgagatttctttgtttacctctctgattttcatctc 41185619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University