View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_30 (Length: 301)
Name: NF5270_low_30
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 26375989 - 26376269
Alignment:
| Q |
10 |
caattaaaggacaatctcatccatttgccattaaatgttacacaacaacacttccaaatttaccaatcaatttcaattaattctaatccctctcattaca |
109 |
Q |
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| T |
26375989 |
caattaaaggacaatctcatccatttgccattaaatgttacacaacaacacttccaaatttaccaatcaatttcaattaattctaatccctctcattaca |
26376088 |
T |
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| Q |
110 |
acagtgattacattagttctgtgaattcaatgatgtcttcagctgataccttttctagtccgcccaaaagcctcatgttgaatgatcaatcttctgatat |
209 |
Q |
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| T |
26376089 |
acagtgattacattagttctgtgaattcaatgatgtcttcagatgataccttttctagtccgtccaaaagcctcatgttgaatgatcaatcttctgatat |
26376188 |
T |
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| Q |
210 |
cattttcactccaaacttgagttgtggtgtaatggccaaacctccaaacccgcccgacgccaagtacgaaacgatgatgat |
290 |
Q |
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| T |
26376189 |
cattttcactccaaacttgagttgtggtgtaatggccaaacctccaaaaccgcccgacgccaagtacgaaacaatgatgat |
26376269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 34317963 - 34318133
Alignment:
| Q |
10 |
caattaaaggacaatctcatccatttgccattaaatgttacacaacaacacttccaaatttaccaatcaatttcaattaattctaatccctctcattaca |
109 |
Q |
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| T |
34317963 |
caattaaaggataatctcagccatttgccattaaatgttacacagcaacacttccaaaatgaccgatcactatcaattaattccaatccctccggttaca |
34318062 |
T |
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| Q |
110 |
acagtgattacattagttctgtgaattcaatgatgtcttcagctgataccttttctagtccgcccaaaagc |
180 |
Q |
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| T |
34318063 |
aaagtgattacattagacctgtgaattcaacggtgtcttcagttgatacctttcctagtcagtccaaaagc |
34318133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 83 - 263
Target Start/End: Original strand, 35680681 - 35680861
Alignment:
| Q |
83 |
caattaattctaatccctctcattacaacagtgattacattagttctgtgaattcaatgatgtcttcagctgataccttttctagtccgcccaaaagcct |
182 |
Q |
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|||||||||| |||||||| ||||||||||||||||| |||| | ||||||||||||| |||| |||| |||||||||| |||||| | |||||||| | |
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| T |
35680681 |
caattaattccaatccctcccattacaacagtgattagattaatcttgtgaattcaatggtgtcatcagttgatacctttcctagtcagtccaaaagcgt |
35680780 |
T |
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| Q |
183 |
catgttgaatgatcaatcttctgatatcattttcactccaaacttgagttgtggtgtaatggccaaacctccaaacccgcc |
263 |
Q |
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| T |
35680781 |
catgtcgaatgatcaatcttttgatatcagtttcacttcaaatttgagttgtggtgtcatggccaaacctccaaagccgcc |
35680861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 35680647 - 35680683
Alignment:
| Q |
30 |
ccatttgccattaaatgttacacaacaacacttccaa |
66 |
Q |
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| T |
35680647 |
ccatttgccgttaaatgttacacaacaacacttccaa |
35680683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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