View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5270_low_35 (Length: 257)
Name: NF5270_low_35
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_35 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 9938192 - 9938430
Alignment:
| Q |
19 |
aagtaacactcagaaattaccagttcgatgatcaccgtcaaacatgctcatttcagaacattagcttatactcaaactgaatcagatatagacctcatag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
9938192 |
aagtaacactcagaaattaccagttcgatgatcaccgtcaaacatgctcatttcagaacattagcttatactcagactgaatcagatatggacctcatag |
9938291 |
T |
|
| Q |
119 |
g-ttcgatatctgctggagcgagtgttgtgttatgtaaaagtgtattctcattattgaatcatggtttgatacaaaggtcctatatatagcaaactgaga |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9938292 |
gtttcgatatctgctggagcgagtgttgtgttatgtaaaagtgtattctcattattgaattatggtttgatacaaagctcctatatatagcaaactgag- |
9938390 |
T |
|
| Q |
218 |
tacacaacaaactgagttacttgagagctaagtaacttcc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9938391 |
tacacaacaaactgagttacttgagagctaagtaacttcc |
9938430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 30288366 - 30288256
Alignment:
| Q |
146 |
tgttatgtaaaagtgtattctcattattgaatcatggtttgatacaaaggtcctatatatagcaaactgagatacacaac-aaactgagttacttgagag |
244 |
Q |
| |
|
||||| |||||| | ||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| || ||||||||||||||| || |
|
|
| T |
30288366 |
tgttaggtaaaaatttattctcattattgaat-atggtttggtacaagactgctatatatagcaaactgagatacactacaaaactgagttacttgcaag |
30288268 |
T |
|
| Q |
245 |
ctaagtaacttc |
256 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30288267 |
ctaagtaacttc |
30288256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University