View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_36 (Length: 256)
Name: NF5270_low_36
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_36 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 45727876 - 45728060
Alignment:
| Q |
16 |
agaagagaacgtagaagggttaggctcaagtgagttggaagagaactaagaagaagaaggtagtttgagcgagtatcgagactgcgagaaacaattaaaa |
115 |
Q |
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| T |
45727876 |
agaagagaacgtagaagggttaggctcaagtgagttggaagagaactatgaagaagaaggtagtttgagcgagtatcgagagtgcgagaaacaattaaaa |
45727975 |
T |
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| Q |
116 |
cacggaaatagaaaaatatattgcgcaatatttattttttaatttgtgttgggcggttaagagcccaacatgagaatcaagtaag |
200 |
Q |
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| T |
45727976 |
cacggaaatagaaaaatatattgcgcaatatttattttttaatttgtgttgggcggttaagagcccaacatgagaatcaagtaag |
45728060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 45728460 - 45728520
Alignment:
| Q |
189 |
gaatcaagtaagacggcactatgcaacaaaactctcccttacctgctacatacacatactt |
249 |
Q |
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| T |
45728460 |
gaatcaagtaagatggcactatgcaacaaaactctcccttacctgctacatacacatactt |
45728520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 45734356 - 45734417
Alignment:
| Q |
15 |
gagaagagaacgtagaagggttaggctcaagtgagttggaagagaactaagaagaagaaggt |
76 |
Q |
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| T |
45734356 |
gagaagagaacatagaagggttaggttcaagtgagttggaagagaactgagaagaagaaggt |
45734417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 82597 - 82635
Alignment:
| Q |
161 |
gtgttgggcggttaagagcccaacatgagaatcaagtaag |
200 |
Q |
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| T |
82597 |
gtgttgggcggttaagagcc-aacatgagaatcaagtaag |
82635 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 18125051 - 18125089
Alignment:
| Q |
161 |
gtgttgggcggttaagagcccaacatgagaatcaagtaag |
200 |
Q |
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| T |
18125051 |
gtgttgggcggttaagagcc-aacatgagaatcaagtaag |
18125089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 30031132 - 30031167
Alignment:
| Q |
161 |
gtgttgggcggttaagagcccaacatgagaatcaagt |
197 |
Q |
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| T |
30031132 |
gtgttgggcggttaagag-ccaacatgagaatcaagt |
30031167 |
T |
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