View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_37 (Length: 253)
Name: NF5270_low_37
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 25933625 - 25933779
Alignment:
| Q |
8 |
gagatgaaaacgacaaaggccacatgtgttagattttaagcttcttgataatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaaaga |
107 |
Q |
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| T |
25933625 |
gagatgaaaacgacaaaggccacatgtgttagattttaagcttcttgataatgacattgatgtagaagacatgttttagttcgaataatgtgaagaaaga |
25933724 |
T |
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| Q |
108 |
ctgatgcggttgtatcttaaggctgagtatattatggcgagccaatacaacccac |
162 |
Q |
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| T |
25933725 |
ctgatgcggttgtatcttaaggctgagtatattatggcgagccaacacaacccac |
25933779 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 28958320 - 28958381
Alignment:
| Q |
43 |
ttaagcttcttgataatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaa |
104 |
Q |
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| T |
28958320 |
ttaagcttcttgataatgaggttgatgtagaagacatgtttaggttcgaagaaggtggagaa |
28958381 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 32494005 - 32493938
Alignment:
| Q |
45 |
aagcttcttgataatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaaagactgatg |
113 |
Q |
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| T |
32494005 |
aagcttcttgataatgacgttgatttagaagacatgttt-tgtttgaataaggtggagaaggagtgatg |
32493938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 8168718 - 8168826
Alignment:
| Q |
41 |
ttttaagcttcttgat-aatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaaagactgatgcggttgtatcttaaggctgagtatat |
139 |
Q |
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| T |
8168718 |
ttttaagcttcttgaggaatgacattgatgtaaaatatatgttttggttcgaagaggataaagaaggaccgatgtggttgtatgttaaagttgagtagat |
8168817 |
T |
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| Q |
140 |
tatggcgag |
148 |
Q |
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| T |
8168818 |
tatgtcgag |
8168826 |
T |
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