View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_4 (Length: 555)
Name: NF5270_low_4
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 6 - 429
Target Start/End: Complemental strand, 9274394 - 9273971
Alignment:
| Q |
6 |
cataggaatgagtgagaaaggtagaatctcgagtgtttttccattttcatagagaattagtttgttggtatttgaaattcatttaattggttaggtgatt |
105 |
Q |
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| T |
9274394 |
cataggaatgagtgagaaaggtagaatctcgagtgtttttctatttttatagagaattggtttgttggtatttgaaattcatttaattggttaggtgatt |
9274295 |
T |
|
| Q |
106 |
gagaaagacaaacaaccgtattataaggtgagagtgtgttgatatgcatgactaccacgtttggtgagggtcatggtgttagctgatactatatgcatcc |
205 |
Q |
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| T |
9274294 |
gagaaagacaaacaaccgtattataaggtgagagtgtgttgatatgcatgactaccacgtttggtgagggtcatggtgttagccgagactatatgcatcc |
9274195 |
T |
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| Q |
206 |
aaaggcaacatttaattcaaatgaagtataacctcagtcccttgttttgtttgcattccttgttgatggttgaaaattgaaccaaaagatctaaataagg |
305 |
Q |
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| T |
9274194 |
aaaggcaacatttaattcaattgaagtataacctcaatcccttgttttgtttgcattccttgttgatggttgaaaattgaaccaaaagatttaaataagg |
9274095 |
T |
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| Q |
306 |
aacactatttggattttagacccctttggattcaacttaattctcctgatgttatggttcaacaatataacgttttttcaccatcgtgaaaatataacac |
405 |
Q |
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| T |
9274094 |
aatactatttggattttggacccctttggattcaacttaattctcctgatgttatggttcaacaatataatgttttttcaccatcgtgaaaatataacac |
9273995 |
T |
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| Q |
406 |
tataataagaagagtcttaggtac |
429 |
Q |
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| T |
9273994 |
tataataagaagagtcttatgtac |
9273971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 410
Target Start/End: Original strand, 12806874 - 12807277
Alignment:
| Q |
6 |
cataggaatgagtgagaaaggtagaatctcgagtgtttttccattttcatagagaattagtttgttggtatttgaaattcatttaattggttaggtgatt |
105 |
Q |
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| T |
12806874 |
cataggaatgagtgagaaaggcaaaatctcaagtgtttttccattttcatagagaattggtttgttggtatttgaaattcatttaatcggttaggtaatt |
12806973 |
T |
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| Q |
106 |
gagaaagacaaacaaccg----tattataaggtgagagtgtgttgatatgcatgactaccacgtttggtgagggtcatggtgttagctgatactatatgc |
201 |
Q |
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| T |
12806974 |
gagaaagacaaacaaccgtacatattatacgatgatagtgtgttgatatgcatgactaccatgtttggtgagggtgatggtgttaacttatactatatgc |
12807073 |
T |
|
| Q |
202 |
atccaaaggcaacatttaattcaaatgaagtataacctcagtcccttgttttgtttgcattccttgttgatggttgaaaattgaaccaaaagatctaaat |
301 |
Q |
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| T |
12807074 |
atccaaaggtagca-ttaattcaatttaagtataacttcagttccttg-tttgtttacactcc---ttgatggttgaaaattaaaccaaaagatccaaat |
12807168 |
T |
|
| Q |
302 |
aaggaacactatttggattttagacccctttggattcaacttaattctcctgatgttatggttcaacaatataacgttttttcaccatcgtgaaaatata |
401 |
Q |
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| T |
12807169 |
aaggaacactatttggattttggacccatttggtttcaacttaattcacctgatgttatgcttcaggaatataacatttgttcaccatcgtgaaaatata |
12807268 |
T |
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| Q |
402 |
acactataa |
410 |
Q |
| |
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||| ||||| |
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| T |
12807269 |
acaatataa |
12807277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 404
Target Start/End: Original strand, 12804267 - 12804663
Alignment:
| Q |
6 |
cataggaatgagtgagaaaggtagaatctcgagtgtttttccattttcatagagaattagtttgttggtatttgaaattcatttaattggttaggtgatt |
105 |
Q |
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| T |
12804267 |
cataggaatgagtgagaaaggcagaatctcaagtgttttttcaatttcatagagaattggtttgttggtatttgaaattcatttaatcggttaggtgatt |
12804366 |
T |
|
| Q |
106 |
gagaaagacaaacaaccgt--attataaggtgagagtgtgttgatatgcatgactaccacgtttggtgagggtcatggtgttagctgatactatatgcat |
203 |
Q |
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|||||||||||||||| || || |||| ||| ||||||||||||||||||||||||| ||||||||| || |||||||||| || ||||| | | ||| |
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| T |
12804367 |
gagaaagacaaacaacggtacatattaagctgacagtgtgttgatatgcatgactaccatgtttggtgatgggcatggtgttaacttatactctgtacat |
12804466 |
T |
|
| Q |
204 |
ccaaaggcaacatttaattcaaatgaagtataacctcagtcccttgttttgtttgcattccttgttgatggttgaaaattgaaccaaaagatctaaataa |
303 |
Q |
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| T |
12804467 |
ccaaaggcaacatttaatccaattcaagtataacttcaattccttg-tttgtttacactcc---ttgatggttaaaaattaaaccaaaagatccaaataa |
12804562 |
T |
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| Q |
304 |
ggaacactatttggattttagacccctttggattcaacttaattctcctgatgttatggttcaacaatataacgttttttcaccatcgtgaaaatataac |
403 |
Q |
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| T |
12804563 |
ggaacactatttggattttggacccatttaatttcaacttaattcacctgatgttatggttcaggaatataacgttttttcaccatcatgaaaatataac |
12804662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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