View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5270_low_41 (Length: 249)

Name: NF5270_low_41
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5270_low_41
NF5270_low_41
[»] chr6 (2 HSPs)
chr6 (150-242)||(29331918-29332010)
chr6 (23-90)||(29332065-29332130)
[»] chr4 (1 HSPs)
chr4 (23-81)||(22630506-22630564)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 29332010 - 29331918
Alignment:
Q  150 ctagtgttaccaaatatttattgttctattactatttttctttaattatacattaggttatacagttaatgagatatgcacagttagaattat 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29332010 ctagtgttaccaaatatttattgttctattactatttttctttaattatacattaggttataaagttaatgagatatgcacagttagaattat 29331918  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 29332130 - 29332065
Alignment:
Q  23 aggcactcttctttaaaacgtaagttcatgcattttaaattaaagtacgttgaattcatctttactaa 90  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||    
T  29332130 aggcactcttctttaaagcgtaagttcatgcattttaaattaaagtacgtt--attcatctttactaa 29332065  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 22630564 - 22630506
Alignment:
Q  23 aggcactcttctttaaaacgtaagttcatgcattttaaattaaagtacgttgaattcat 81  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  22630564 aggcactcttctttataacgtaagttcatgcattttaaatttaagtacgttgagttcat 22630506  T

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