View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_46 (Length: 239)
Name: NF5270_low_46
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_46 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 45182044 - 45181827
Alignment:
| Q |
18 |
cttactcctgatcatcacaagtttttcttgtaccaacttcttcgaggcataaataaaatatatacattcaggtatccatcattaattataatcacttcac |
117 |
Q |
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| T |
45182044 |
cttactcctgatcatcacaagtttttcttgtaccaacttcttcgaggcataaa----atatatacattcaggtatccatcattaattataatcacttcac |
45181949 |
T |
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| Q |
118 |
ttcctttattattttagatagtaaactcatgtatctatttcattttggactggctcgagcatcatttagcgacactgcatctactatatactggactgta |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45181948 |
ttcctttattattttagatattaaactcatgtatctatttcattttggactggctcgagcatcatttagcgacactgcatctactatatactggactgta |
45181849 |
T |
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| Q |
218 |
agtagtactctaatagtaatac |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
45181848 |
agtagtactctaatagtaatac |
45181827 |
T |
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