View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_48 (Length: 237)
Name: NF5270_low_48
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 45728820 - 45729024
Alignment:
| Q |
1 |
aagcatatttgaaatttcggattcttata--tttgattgcattaactgtattccttattacaaattgtttaaactttcagatgaaacttcattatcatat |
98 |
Q |
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| T |
45728820 |
aagcatatttgaaatttcagattcttatatatttgattgcatcaactgtattccttattacaaattgtttaaaatttcagatgaaacttcattatcatat |
45728919 |
T |
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| Q |
99 |
tagtataattatcctaagaaacacaagcattgtatatgctagctcaacgtcattgcaggttaatatctccatttctccatggaaaacgaatatggcgaat |
198 |
Q |
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| T |
45728920 |
tagtataattatcctaagaaacacaagcattgtatatgctagctcaacgtcattgcag--taatatctccatttctccatggaaaacgaatatggcgaat |
45729017 |
T |
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| Q |
199 |
ataaata |
205 |
Q |
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||||||| |
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| T |
45729018 |
ataaata |
45729024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 45735045 - 45735108
Alignment:
| Q |
1 |
aagcatatttgaaatttcggattcttatatttgattgcattaactgtattccttattacaaatt |
64 |
Q |
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|||||||||| |||||| |||||||||||||||||| |||| ||||||| ||||||||||||| |
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| T |
45735045 |
aagcatatttaaaattttagattcttatatttgattgtattagctgtatttcttattacaaatt |
45735108 |
T |
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