View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_5 (Length: 532)
Name: NF5270_low_5
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 228 - 521
Target Start/End: Complemental strand, 32187522 - 32187229
Alignment:
| Q |
228 |
aaaaataaaaataaactggcatatgaacatatggtagtaaagtgaagctcaagacctttgatcatgtcaaatcactcaaaccaaataactatgtgttcgc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| |
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| T |
32187522 |
aaaaataaaaataaactggcatatgaacatatggtagtaaagtgaagctcaagaccttggatcatgtcaaatcactcaaaccagataactgtgtgttcgc |
32187423 |
T |
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| Q |
328 |
actattctttttatgacagtatcaaagtgacttcttgggacatactcattaaaaacatttcactgaggagaaatatgacaatttaaacttttcttagaca |
427 |
Q |
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||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32187422 |
actattctttttatgccagtatcaaagtgatttcttggggcatactcattaaaaacatttcactgaggagaaatatgacaatttaaacttttcttagaca |
32187323 |
T |
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| Q |
428 |
atttaaacctcaaaacccgaattcaagttggaaannnnnnnaaaatttaccctctaattcatgagcctacatgctaatttgtttggacccctat |
521 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32187322 |
atttaaacctcaaaacccgaattcaagttggaaacatttttaaaatttaccctctaattcacgagcctacatgctaatttgtttggacccctat |
32187229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 32187732 - 32187567
Alignment:
| Q |
19 |
aaatgagccatagaagtgtgtctcgggttgagaaagaaaggtatatgaaagtaggggcaaatttgaattgtccatccacccatgtggtgacatataatta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32187732 |
aaatgagccatagaagtgtgtctcgggttgagaaagaaaggtatatgaaagtaggggcaaatttgaattgtccatccacccatgtggtgacatataacta |
32187633 |
T |
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| Q |
119 |
tagttaatcctcgtaactgatgatggttaatcatattgtagttttaacatcatttcaaagctattc |
184 |
Q |
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| T |
32187632 |
tggttaatcctcgtaactgatgatggttaatcatattgtagttttaacatcatttcaaagctattc |
32187567 |
T |
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