View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_53 (Length: 228)
Name: NF5270_low_53
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 9137519 - 9137727
Alignment:
| Q |
6 |
aaattataaatttacaaaagaaaagaattaaaagaacgaagtaggtgtaaattttctgacagatatatgttacaattttctattagtcataattagttat |
105 |
Q |
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| T |
9137519 |
aaattataaatttacaaaagaaaagaattaaaagaacgaagtaggtgtaaattttctcaatgatattagttacaattttctattagtcataattagttat |
9137618 |
T |
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| Q |
106 |
agagataacagagatatgacttcagtagaaaaagtaaatagcatcaaaaacactaacaagtagaaataaattaacaaagcaaatctgagaatggttctga |
205 |
Q |
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| T |
9137619 |
agagatgagagatatatgacttcagtaagtaaa--aaatagcatcaaaaacactaacaagtagaagtaaattaacaaagcaaatctgagaatggttctga |
9137716 |
T |
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| Q |
206 |
gatcacatatt |
216 |
Q |
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| T |
9137717 |
gatcacatatt |
9137727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 8040306 - 8040412
Alignment:
| Q |
8 |
attataaatt--tacaaaagaaaagaattaaaagaacgaagtaggtgtaaattttctgacagatatatgttacaa-ttttctattagtcataattagtta |
104 |
Q |
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| T |
8040306 |
attataaattactacaaaagtaaagaattaaaagaaagaagtaggtgtaaattttcacacagatatatgttacaatttttctattagtcataattagtta |
8040405 |
T |
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| Q |
105 |
tagagat |
111 |
Q |
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| T |
8040406 |
gagagat |
8040412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 31326400 - 31326473
Alignment:
| Q |
35 |
aaaagaacgaagtaggtgtaaattttctgacagatatatgttacaatttt-ctattagtcataattagttatagaga |
110 |
Q |
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||||||| ||||||||||||||||| || |||||||| | ||||||||| ||||||||||| ||||||||| |||| |
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| T |
31326400 |
aaaagaaagaagtaggtgtaaattt-ctcacagatattt--tacaatttttctattagtcatgattagttattgaga |
31326473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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