View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5270_low_55 (Length: 228)

Name: NF5270_low_55
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5270_low_55
NF5270_low_55
[»] chr1 (27 HSPs)
chr1 (1-223)||(42829061-42829283)
chr1 (1-89)||(41558089-41558177)
chr1 (6-88)||(7423115-7423197)
chr1 (1-86)||(50777312-50777398)
chr1 (2-90)||(30530285-30530373)
chr1 (1-88)||(42843231-42843319)
chr1 (1-89)||(33669710-33669798)
chr1 (6-89)||(8934421-8934504)
chr1 (1-36)||(32873437-32873472)
chr1 (1-92)||(44112550-44112641)
chr1 (1-81)||(13813654-13813735)
chr1 (1-90)||(33422105-33422194)
chr1 (7-90)||(25130805-25130889)
chr1 (1-81)||(38233369-38233449)
chr1 (1-89)||(52417627-52417715)
chr1 (1-91)||(15061941-15062032)
chr1 (1-86)||(9011741-9011827)
chr1 (11-53)||(16234219-16234261)
chr1 (1-87)||(34002209-34002295)
chr1 (1-34)||(2827652-2827685)
chr1 (1-54)||(51726998-51727051)
chr1 (1-86)||(52369001-52369086)
chr1 (1-89)||(4511664-4511752)
chr1 (1-89)||(5315307-5315395)
chr1 (1-37)||(5959484-5959520)
chr1 (1-53)||(7203767-7203819)
chr1 (11-89)||(46902708-46902788)
[»] chr4 (38 HSPs)
chr4 (1-89)||(11063976-11064064)
chr4 (1-53)||(8455999-8456051)
chr4 (1-87)||(15638226-15638313)
chr4 (7-89)||(18568701-18568784)
chr4 (1-87)||(20056478-20056565)
chr4 (1-91)||(32079205-32079296)
chr4 (1-83)||(42516730-42516812)
chr4 (4-53)||(29949596-29949645)
chr4 (1-58)||(36728540-36728597)
chr4 (1-49)||(3223085-3223133)
chr4 (1-88)||(20632535-20632623)
chr4 (1-89)||(22071594-22071682)
chr4 (1-88)||(32901425-32901513)
chr4 (1-88)||(33483993-33484081)
chr4 (1-84)||(41495109-41495193)
chr4 (1-87)||(2193697-2193784)
chr4 (1-91)||(6126949-6127040)
chr4 (1-36)||(6686142-6686177)
chr4 (1-88)||(11012221-11012308)
chr4 (1-84)||(17363326-17363409)
chr4 (1-44)||(33438141-33438184)
chr4 (10-88)||(34259931-34260010)
chr4 (1-87)||(41609560-41609647)
chr4 (1-58)||(5208245-5208302)
chr4 (1-81)||(24235416-24235497)
chr4 (1-58)||(27001327-27001384)
chr4 (1-58)||(29972966-29973023)
chr4 (1-58)||(31221509-31221566)
chr4 (6-87)||(34114006-34114087)
chr4 (3-36)||(36364725-36364758)
chr4 (42-83)||(41457950-41457991)
chr4 (1-81)||(44272706-44272787)
chr4 (1-81)||(44368096-44368177)
chr4 (1-58)||(47106007-47106064)
chr4 (1-58)||(51377211-51377268)
chr4 (4-88)||(4514153-4514237)
chr4 (1-49)||(19315002-19315050)
chr4 (4-88)||(32713945-32714029)
[»] chr2 (24 HSPs)
chr2 (1-87)||(2308213-2308299)
chr2 (1-87)||(36909732-36909818)
chr2 (1-86)||(38572035-38572121)
chr2 (1-90)||(7497877-7497966)
chr2 (4-53)||(29582303-29582352)
chr2 (1-81)||(37966452-37966533)
chr2 (1-89)||(43791677-43791766)
chr2 (1-61)||(36383558-36383618)
chr2 (1-88)||(546273-546360)
chr2 (1-36)||(4432423-4432458)
chr2 (1-87)||(12192043-12192130)
chr2 (1-83)||(13453848-13453930)
chr2 (1-87)||(38689005-38689092)
chr2 (1-35)||(37109313-37109347)
chr2 (2-88)||(42665700-42665786)
chr2 (1-86)||(6666116-6666201)
chr2 (1-58)||(23048001-23048058)
chr2 (1-58)||(27307163-27307220)
chr2 (1-81)||(30413626-30413707)
chr2 (1-34)||(35518371-35518404)
chr2 (1-90)||(40496446-40496535)
chr2 (2-34)||(14957689-14957721)
chr2 (1-37)||(25997669-25997705)
chr2 (51-87)||(37601351-37601387)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-90)||(156002-156091)
[»] chr7 (24 HSPs)
chr7 (1-58)||(25614739-25614796)
chr7 (1-88)||(17500793-17500880)
chr7 (1-88)||(17552334-17552421)
chr7 (1-87)||(31009529-31009615)
chr7 (1-89)||(8742479-8742568)
chr7 (1-81)||(33050279-33050360)
chr7 (1-89)||(37385119-37385208)
chr7 (1-92)||(23761163-23761254)
chr7 (1-88)||(27070557-27070644)
chr7 (1-88)||(27207669-27207756)
chr7 (1-36)||(32315922-32315957)
chr7 (1-48)||(35098515-35098562)
chr7 (1-36)||(37149415-37149450)
chr7 (2-49)||(42118624-42118671)
chr7 (1-87)||(42431819-42431906)
chr7 (4-87)||(49089053-49089136)
chr7 (1-34)||(7458175-7458208)
chr7 (9-89)||(8326229-8326310)
chr7 (1-81)||(26041406-26041487)
chr7 (1-88)||(10014842-10014930)
chr7 (1-56)||(23330005-23330058)
chr7 (1-89)||(31436513-31436600)
chr7 (1-81)||(38978588-38978668)
chr7 (1-36)||(42467300-42467336)
[»] chr6 (15 HSPs)
chr6 (1-89)||(1803965-1804054)
chr6 (7-87)||(6435138-6435219)
chr6 (1-94)||(2333471-2333564)
chr6 (1-89)||(7693411-7693499)
chr6 (1-81)||(9200206-9200286)
chr6 (1-88)||(11017478-11017566)
chr6 (1-87)||(12441623-12441710)
chr6 (17-88)||(19788964-19789035)
chr6 (1-88)||(30622120-30622207)
chr6 (1-87)||(18792321-18792407)
chr6 (1-81)||(3339393-3339474)
chr6 (1-58)||(3800690-3800747)
chr6 (1-88)||(17417121-17417210)
chr6 (1-89)||(3712506-3712594)
chr6 (2-90)||(30795981-30796069)
[»] chr8 (22 HSPs)
chr8 (1-89)||(154386-154474)
chr8 (1-92)||(2597043-2597135)
chr8 (1-87)||(8074614-8074700)
chr8 (1-89)||(43605555-43605644)
chr8 (1-89)||(27631043-27631131)
chr8 (2-53)||(35595307-35595358)
chr8 (6-89)||(42026473-42026556)
chr8 (1-58)||(20994976-20995033)
chr8 (1-89)||(28623009-28623100)
chr8 (1-81)||(30927825-30927906)
chr8 (1-81)||(323975-324055)
chr8 (1-89)||(29910099-29910187)
chr8 (2-85)||(37562031-37562115)
chr8 (11-81)||(20284813-20284884)
chr8 (11-81)||(21071442-21071513)
chr8 (1-81)||(8888348-8888430)
chr8 (7-89)||(23258134-23258216)
chr8 (1-58)||(6825195-6825252)
chr8 (1-81)||(33817253-33817334)
chr8 (1-81)||(43587737-43587818)
chr8 (8-88)||(7129636-7129716)
chr8 (2-34)||(33511698-33511730)
[»] chr5 (31 HSPs)
chr5 (2-54)||(4820252-4820304)
chr5 (1-92)||(16292134-16292225)
chr5 (1-89)||(17489444-17489533)
chr5 (1-88)||(22203803-22203891)
chr5 (1-89)||(30301306-30301394)
chr5 (1-88)||(27340965-27341052)
chr5 (1-88)||(42825210-42825297)
chr5 (1-87)||(3155098-3155184)
chr5 (1-89)||(8959256-8959345)
chr5 (1-81)||(25345434-25345515)
chr5 (1-89)||(18638728-18638816)
chr5 (1-36)||(1760457-1760492)
chr5 (1-60)||(29803319-29803378)
chr5 (1-36)||(41210454-41210489)
chr5 (1-87)||(3722965-3723051)
chr5 (1-91)||(21062878-21062967)
chr5 (1-90)||(39788605-39788695)
chr5 (1-62)||(4954562-4954623)
chr5 (1-81)||(11464017-11464098)
chr5 (42-87)||(12779495-12779540)
chr5 (1-90)||(14914466-14914555)
chr5 (1-58)||(15622140-15622197)
chr5 (1-58)||(20125486-20125543)
chr5 (1-58)||(28501713-28501770)
chr5 (1-58)||(30574295-30574352)
chr5 (1-58)||(33823612-33823669)
chr5 (1-34)||(35616743-35616776)
chr5 (2-58)||(12401289-12401345)
chr5 (1-49)||(22920419-22920467)
chr5 (1-89)||(33626525-33626613)
chr5 (1-37)||(34952344-34952380)
[»] chr3 (30 HSPs)
chr3 (1-88)||(23906874-23906962)
chr3 (1-87)||(54233389-54233476)
chr3 (1-89)||(43460484-43460573)
chr3 (1-58)||(44910800-44910857)
chr3 (7-59)||(11574656-11574708)
chr3 (1-88)||(18713699-18713786)
chr3 (1-79)||(2009750-2009828)
chr3 (1-86)||(51717537-51717623)
chr3 (1-81)||(11327204-11327285)
chr3 (1-86)||(12094280-12094365)
chr3 (1-81)||(32931812-32931893)
chr3 (1-88)||(47683886-47683974)
chr3 (1-88)||(622347-622434)
chr3 (1-36)||(34021403-34021438)
chr3 (1-92)||(35425556-35425647)
chr3 (4-58)||(12762861-12762915)
chr3 (2-48)||(46323043-46323089)
chr3 (7-87)||(1208047-1208128)
chr3 (1-34)||(7039173-7039206)
chr3 (7-48)||(7867637-7867678)
chr3 (1-58)||(13159757-13159814)
chr3 (1-58)||(34900736-34900793)
chr3 (1-58)||(35756076-35756133)
chr3 (1-58)||(36819052-36819109)
chr3 (7-87)||(53932279-53932360)
chr3 (1-89)||(4208115-4208203)
chr3 (1-89)||(23920393-23920481)
chr3 (1-37)||(28884576-28884612)
chr3 (1-49)||(37585527-37585575)
chr3 (1-49)||(44972829-44972877)
[»] scaffold0193 (1 HSPs)
scaffold0193 (1-56)||(24769-24824)
[»] scaffold0511 (1 HSPs)
scaffold0511 (1-87)||(11734-11820)
[»] scaffold0514 (1 HSPs)
scaffold0514 (1-58)||(1414-1471)
[»] scaffold0016 (1 HSPs)
scaffold0016 (3-36)||(204387-204420)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-58)||(147174-147231)
[»] scaffold0260 (1 HSPs)
scaffold0260 (2-86)||(21385-21469)
[»] scaffold0238 (1 HSPs)
scaffold0238 (1-89)||(16487-16575)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42829283 - 42829061
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttcttctcgttgt 100  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42829283 ctctctattgttttttaccaataagaagagagaaaagaagggttgtcaccaaaattgttataaatggttgtacaaatatcactactcttcttctcgttgt 42829184  T
Q  101 ctttgaattgacatttgctgttgcttttctttcaatatggttgtttgcttaatctttttaatcttgaaaacaatgcttgttcttcttgtctttcattttc 200  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42829183 ctttgaattgacatttgttgttgttcttctttcaatatggttgtttgcttaatctttttaatcttgaaaacaatgcttgttcttcttgtctttcattttc 42829084  T
Q  201 tagttctataaccttcatctcac 223  Q
    || ||||||||||||||| ||||    
T  42829083 tatttctataaccttcatttcac 42829061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41558089 - 41558177
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||| ||||||||||||| |||||| ||  |||||||| | | |||| | |||||||| |||||||||||||||||||    
T  41558089 ctctctattgtttttgaccaataagaagaaagaaaaggaaagttgtcacaatagttgtcacaaatggttgtacaaatatcactactctt 41558177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 7423115 - 7423197
Alignment:
Q  6 tattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    |||||||||| ||||||||||| |||||||| || ||||||||| ||| |||||| |||| ||| || |||||||||||||||    
T  7423115 tattgtttttgaccaataagaaaagagaaaaggaaggttgtcacaaaagttgttaaaaatagttgtataaatatcactactct 7423197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 50777398 - 50777312
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactact 86  Q
    ||||||||||||||| ||||||||||||||||||||  | |||||||||||||||||| || || ||| | ||||||||||| ||||    
T  50777398 ctctctattgtttttaaccaataagaagagagaaaaacaaggttgtcaccaaaattgtcatcaattggatgtacaaatatcattact 50777312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 30530373 - 30530285
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttc 90  Q
    |||| ||||||||  |||||||||||||||||||||||  ||||||| |||| ||||   |||||||| |||| |||||||||||||||    
T  30530373 tctccattgttttggaccaataagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactcttc 30530285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 42843319 - 42843231
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactct 88  Q
    ||||| ||||||||| ||||||||||||||||||||  | |||||||||||||||| | || || ||| | ||||||||||||||||||    
T  42843319 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcaccaaaattatcatcaattggatgtacaaatatcactactct 42843231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 33669798 - 33669710
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    |||| |||||||||  |||||| |||||||| |||||||| ||||||| |||| ||||   |||||||| |||| ||||||||||||||    
T  33669798 ctctttattgttttggaccaatgagaagagaaaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactctt 33669710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 8934504 - 8934421
Alignment:
Q  6 tattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    |||||||||| ||||||||||| |||||||| ||  |||||||   ||||||| | |||||||| | |||||||||||||||||    
T  8934504 tattgtttttgaccaataagaaaagagaaaaagaaagttgtcatagaaattgtcacaaatggttgttcaaatatcactactctt 8934421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32873437 - 32873472
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  32873437 ctctctattgttttttaccaataagaagagagaaaa 32873472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44112550 - 44112641
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttctt 92  Q
    ||||||||||||||  |||||| |||||||||||||| |  ||||||| |||| |||| | |||||||| |  | |||||||||||||||||    
T  44112550 ctctctattgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactcttctt 44112641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 13813654 - 13813735
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| |||||||  ||||| | |||||||||||    
T  13813654 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgttatggaatggatgtacaaatatca 13813735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33422194 - 33422105
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttc 90  Q
    ||||||||||||||  |||||| |||||||||||||| |  ||||||| |||| |||| | |||||||| |  | |||||||||||||||    
T  33422194 ctctctattgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactcttc 33422105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 25130805 - 25130889
Alignment:
Q  7 attgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactcttc 90  Q
    ||||||||| ||||||||||||||||||||  | ||||||||| ||| |||| || |||| | | ||||||||||||| ||||||    
T  25130805 attgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatagatgtacaaatatcactgctcttc 25130889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38233369 - 38233449
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatca 81  Q
    ||||||||||||||  ||||||| |||||||| |||| |  |||||||  |||||||||| | |||||| |||||||||||    
T  38233369 ctctctattgttttggaccaataggaagagagtaaataaaagttgtcattaaaattgttagatatggttgtacaaatatca 38233449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 52417627 - 52417715
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||| ||||||||  |||||||||||||||||||||||  ||| ||| |||| |||||  |||| ||| || | ||||||||||||||    
T  52417627 ctctccattgttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgttccaaatagttgtatatatatcactactctt 52417715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 15061941 - 15062032
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactcttct 91  Q
    ||||| |||||||||  ||||||| |||||||||||  |  ||||||||||||| |  ||| |||||||| | |||||||||||||||||||    
T  15061941 ctctccattgtttttatccaataaaaagagagaaaaaaaaagttgtcaccaaaagttatatgaaatggttgttcaaatatcactactcttct 15062032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 9011741 - 9011827
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactact 86  Q
    ||||| ||||||||| ||||||||||||||||||||  | | ||||||| || ||||| || |||||| | ||||||||||| ||||    
T  9011741 ctctccattgtttttgaccaataagaagagagaaaaacaagattgtcactaacattgtcatgaaatggatgtacaaatatcattact 9011827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 16234261 - 16234219
Alignment:
Q  11 ttttttaccaataagaagagagaaaatgagggttgtcaccaaa 53  Q
    ||||| ||||||||||||||||||||||  |||||||||||||    
T  16234261 tttttgaccaataagaagagagaaaatgtaggttgtcaccaaa 16234219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 34002295 - 34002209
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    ||||| ||||||||  |||||||||||||||||||||||  ||||| | |||| ||||   |||| ||| |||| ||||||||||||    
T  34002295 ctctccattgttttggaccaataagaagagagaaaatgaaagttgtgatcaaagttgtcccaaatagttgtacatatatcactactc 34002209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2827685 - 2827652
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaa 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  2827685 ctctctattgtttttgaccaataagaagagagaa 2827652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 51727051 - 51726998
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaa 54  Q
    |||||||||||||| ||||||||||| ||||||||| |  ||||||||| ||||    
T  51727051 ctctctattgttttataccaataagatgagagaaaaggtaggttgtcactaaaa 51726998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 52369086 - 52369001
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactact 86  Q
    ||||||||||||||  |||||| |||| |||| ||||||  ||||||| |||| ||||  ||||| ||| |||| |||||||||||    
T  52369086 ctctctattgttttggaccaatgagaatagagcaaatgaaagttgtcatcaaagttgtactaaatagttgtacatatatcactact 52369001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4511752 - 4511664
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||  |||||| |||||||| |||||||  ||||||| | || ||||   |||||||| |||| |||||| |||||||    
T  4511752 ctctctattgttttggaccaatgagaagagaaaaaatgaaagttgtcatctaagttgtcccaaatggttgtacatatatcattactctt 4511664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 5315307 - 5315395
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    |||| |||||||||  ||||||||||| |||||||||||  || |||| |||| ||||   |||||||| |||| ||| ||||||||||    
T  5315307 ctctatattgttttgaaccaataagaaaagagaaaatgaaagtcgtcatcaaagttgtctaaaatggttgtacatatagcactactctt 5315395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5959484 - 5959520
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaat 37  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  5959484 ctctccattgtttttgaccaataagaagagagaaaat 5959520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7203819 - 7203767
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaa 53  Q
    ||||||||||||||| |||||||  |||||||||||  | |||||||||||||    
T  7203819 ctctctattgtttttgaccaatagaaagagagaaaaacaaggttgtcaccaaa 7203767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 46902708 - 46902788
Alignment:
Q  11 ttttttaccaataagaagaga-gaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||||||||| |||||  |  |||||||| |||||||| || || ||| | |||||||||||||||||||    
T  46902708 ttttttaccaataagaagagaggaaaaaaaaagttgtcactaaaattgtcatcaattggatgtacaaatatcactactctt 46902788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11064064 - 11063976
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||| ||| |||| |||| |||||||||  |||||||||||| ||||  ||||||||| | |||||||||||||||||    
T  11064064 ctctctattgtttttgaccgataaaaagaaagaaaatgaaagttgtcaccaaagttgtcttaaatggttgttcaaatatcactactctt 11063976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8455999 - 8456051
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaa 53  Q
    ||||||||||||||| |||||||| ||||||||||| || |||||||||||||    
T  8455999 ctctctattgtttttgaccaataaaaagagagaaaaagaaggttgtcaccaaa 8456051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 15638226 - 15638313
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactc 87  Q
    ||||| |||||||||  |||||||||||||||||||  | ||||||||||||| |||| || || ||| | |||||||||||||||||    
T  15638226 ctctccattgtttttgtccaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 15638313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 18568784 - 18568701
Alignment:
Q  7 attgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactctt 89  Q
    ||||||||| ||||||||||||| ||||||  | ||||||||||||| |||| || || ||| | |||||||||||||||||||    
T  18568784 attgtttttgaccaataagaagatagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactctt 18568701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 20056478 - 20056565
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactc 87  Q
    ||||| ||||||||| ||||||||||||||||||||  | | ||||||||||| |||| || || ||| | |||||||||||||||||    
T  20056478 ctctcaattgtttttgaccaataagaagagagaaaagcaagattgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 20056565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 32079205 - 32079296
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactcttct 91  Q
    ||||| ||||||||| | ||||||||| ||||||||  | ||||||||| ||| ||||||| |||||  | |||||||||||||||||||||    
T  32079205 ctctccattgtttttgatcaataagaaaagagaaaaacaaggttgtcactaaagttgttatgaaatgtatgtacaaatatcactactcttct 32079296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 42516730 - 42516812
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcact 83  Q
    ||||||||||| ||  |||||| |||||||| |||||||  ||||||| ||||||||| | |||||||| |||| ||||||||    
T  42516730 ctctctattgtcttggaccaatgagaagagaaaaaatgaaagttgtcatcaaaattgtcacaaatggttgtacatatatcact 42516812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 29949645 - 29949596
Alignment:
Q  4 tctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaa 53  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||| ||||    
T  29949645 tctattgttttttaccaataagaagagagaaaaagaaagttgtcatcaaa 29949596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 36728597 - 36728540
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||||||||||||||||||||||||  |  |||||||||||| ||||    
T  36728597 ctctccattgttttttaccaataagaagagagaaaaacaaagttgtcaccaaagttgt 36728540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3223085 - 3223133
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcac 49  Q
    ||||| ||||||||| |||||||||||||||||||| || |||||||||    
T  3223085 ctctccattgtttttgaccaataagaagagagaaaaagaaggttgtcac 3223133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 20632623 - 20632535
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactct 88  Q
    ||||| ||||||||| ||||||| ||||||| ||||  |  ||||||||||||||||| || || ||| | ||||||||||||||||||    
T  20632623 ctctccattgtttttgaccaataggaagagaaaaaaataaagttgtcaccaaaattgtcatcaattggatgtacaaatatcactactct 20632535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 22071594 - 22071682
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||| |||||||||||||||||||| ||  |||||||   || ||||   |||||||| ||| ||||||||| |||||    
T  22071594 ctctctattgtttttaaccaataagaagagagaaaaagaaagttgtcaaacaagttgtaccaaatggttgtactaatatcactcctctt 22071682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32901425 - 32901513
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactct 88  Q
    ||||| ||||||||| |||||||| |||||||||||  | | |||||||||||||| | || || ||| | ||||||||||||||||||    
T  32901425 ctctccattgtttttgaccaataaaaagagagaaaaacaagattgtcaccaaaattatcatcaattggatgtacaaatatcactactct 32901513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33484081 - 33483993
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactct 88  Q
    ||||| ||||||||| | ||||||||||||||||||  | ||||||||||||| |||| || || ||| | ||||||||||| ||||||    
T  33484081 ctctccattgtttttgatcaataagaagagagaaaagtaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcattactct 33483993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 41495109 - 41495193
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcacta 84  Q
    ||||| ||||||||| ||||||||||||||||||||  |  ||||||||||||||| | || || | | ||||||||||||||||    
T  41495109 ctctccattgtttttgaccaataagaagagagaaaaacaaagttgtcaccaaaattatcatcaattagatatacaaatatcacta 41495193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 2193784 - 2193697
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactc 87  Q
    ||||| ||||||||| ||||||||||||||||||||  | | |||||| |||| |||| || || ||| | |||||||||||||||||    
T  2193784 ctctccattgtttttgaccaataagaagagagaaaaacaagattgtcatcaaagttgtcatcaattggatgtacaaatatcactactc 2193697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 6126949 - 6127040
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta-taaatggttatacaaatatcactactcttct 91  Q
    |||||||||||| || ||||||||||| |||||||| |  ||||||||| ||| |||| | |||| |||| | ||||||||| |||||||||    
T  6126949 ctctctattgttcttgaccaataagaaaagagaaaaggtaggttgtcacaaaagttgtcattaaaaggttgttcaaatatcattactcttct 6127040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6686142 - 6686177
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaa 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  6686142 ctctctattgtttttgaccaataagaagagagaaaa 6686177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 11012221 - 11012308
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    |||||||||||||   ||||||||||| |||||||||||  ||||||| |||| |||| | | ||| || |||| |||||||||||||    
T  11012221 ctctctattgtttcggaccaataagaaaagagaaaatgaaagttgtcatcaaagttgtcacatatgattgtacatatatcactactct 11012308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 17363326 - 17363409
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcacta 84  Q
    ||||||||||||||  |||||| | ||||||| ||||||  ||||||| |||| ||||   |||||||| ||||||||||||||    
T  17363326 ctctctattgttttggaccaatgaaaagagagcaaatgaaagttgtcatcaaagttgtataaaatggttttacaaatatcacta 17363409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 33438141 - 33438184
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggtt 44  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||    
T  33438141 ctctctattgtttttgaccaataaaaagagagaaaatgaaggtt 33438184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 34259931 - 34260010
Alignment:
Q  10 gttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta-taaatggttatacaaatatcactactct 88  Q
    |||||| |||||||||||||||||||| || | ||||||| ||| |||| |  |||||||| ||||||||||| ||||||    
T  34259931 gtttttgaccaataagaagagagaaaaagaagtttgtcacaaaagttgtcaccaaatggttgtacaaatatcattactct 34260010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 41609647 - 41609560
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactc 87  Q
    ||||||||||||||| |||||| | ||||||||||| |  | ||||||| |||||||| || |||||||| | ||||||||| |||||    
T  41609647 ctctctattgtttttgaccaattaaaagagagaaaaagtagattgtcacaaaaattgtcatcaaatggttgttcaaatatcattactc 41609560  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5208302 - 5208245
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  5208302 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgt 5208245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 24235416 - 24235497
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||| ||||||||| ||||||||||||||||||||| |   ||||||| ||| |||| || |||||| | |||||||||||    
T  24235416 ctctccattgtttttgaccaataagaagagagaaaattaaaattgtcactaaagttgtcatgaaatggatgtacaaatatca 24235497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27001384 - 27001327
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  27001384 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgt 27001327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29973023 - 29972966
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||||||| |||||||||||||| ||||| ||||| ||  |||||||| ||||||||    
T  29973023 ctctctattattttttaccaataaaaagagcgaaaaagaatgttgtcacaaaaattgt 29972966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31221509 - 31221566
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | | ||||||| ||||||||    
T  31221509 ctctccattgtttttgaccaataagaagagagaaaaacaagattgtcactaaaattgt 31221566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 34114087 - 34114006
Alignment:
Q  6 tattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    |||||||||  |||||||||||||||||||||||  |||  || |||| |||||  ||||| || |||| ||||||||||||    
T  34114087 tattgttttggaccaataagaagagagaaaatgaaagttaccatcaaagttgttccaaatgattgtacatatatcactactc 34114006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 36364758 - 36364725
Alignment:
Q  3 ctctattgttttttaccaataagaagagagaaaa 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  36364758 ctctattgtttttgaccaataagaagagagaaaa 36364725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 41457950 - 41457991
Alignment:
Q  42 gttgtcaccaaaattgttataaatggttatacaaatatcact 83  Q
    |||||||| |||||| | ||||||||||||||||||||||||    
T  41457950 gttgtcacaaaaattatcataaatggttatacaaatatcact 41457991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 44272787 - 44272706
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta-taaatggttatacaaatatca 81  Q
    |||| |||||||||| |||||||| ||||||||||| |  | |||||| |||||||||||  |||||||| | |||||||||    
T  44272787 ctctttattgtttttgaccaataataagagagaaaaaggagattgtcatcaaaattgttagcaaatggttgttcaaatatca 44272706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 44368177 - 44368096
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||| ||||||||| || |||||||||||||||||  | ||||||||| ||| |||| || |||||| | |||||||||||    
T  44368177 ctctccattgtttttgacaaataagaagagagaaaaataaggttgtcactaaagttgtcatgaaatggatgtacaaatatca 44368096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 47106007 - 47106064
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  47106007 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgt 47106064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 51377268 - 51377211
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  51377268 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgt 51377211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 4514237 - 4514153
Alignment:
Q  4 tctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    |||||||||||  |||||| ||||||||||||||||   |||||| |||| |||| || ||| ||| |||| ||||||| |||||    
T  4514237 tctattgttttggaccaatgagaagagagaaaatgaaaattgtcatcaaagttgtcatgaatagttgtacatatatcaccactct 4514153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19315002 - 19315050
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcac 49  Q
    ||||||||||||||| ||||||||||||| |||||| ||  ||||||||    
T  19315002 ctctctattgtttttgaccaataagaagaaagaaaaagaaagttgtcac 19315050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 32713945 - 32714029
Alignment:
Q  4 tctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    |||||| ||||| |||||||| || |||||||||||   |||||||||||||| |   |||| ||| | ||||||||||||||||    
T  32713945 tctattatttttgaccaataaaaaaagagaaaatgaaaattgtcaccaaaattatctcaaatcgttgttcaaatatcactactct 32714029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 2308299 - 2308213
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    ||||||||| |||||  ||||| ||||||||||||||||  ||||||| |||| |||| ||| |||||| |||||||||||||||||    
T  2308299 ctctctattatttttggccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcatatatggttgtacaaatatcactactc 2308213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 36909818 - 36909732
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    ||||| ||||||||| ||||||||||||||||||||  |  ||||||| |||| ||||   |||||| | |||||||||||||||||    
T  36909818 ctctccattgtttttgaccaataagaagagagaaaaacaaagttgtcatcaaagttgtatgaaatggatgtacaaatatcactactc 36909732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 38572035 - 38572121
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactact 86  Q
    ||||| ||||| ||| ||||||||||||||||||||  | ||||||||||||| ||||||| || ||  | ||||||||||||||||    
T  38572035 ctctccattgtctttgaccaataagaagagagaaaaacaaggttgtcaccaaagttgttatcaattgaatgtacaaatatcactact 38572121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7497966 - 7497877
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttc 90  Q
    ||||||||||||||  |||||| |||||||||||||| |  ||||||| |||| |||| | |||||||| |  | |||||||||||||||    
T  7497966 ctctctattgttttgaaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactcttc 7497877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 29582352 - 29582303
Alignment:
Q  4 tctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaa 53  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||| ||||    
T  29582352 tctattgttttttaccaataagaagagagaaaaagaaagttgtcatcaaa 29582303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 37966452 - 37966533
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| |||| || |||||| | |||||||||||    
T  37966452 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatca 37966533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 43791766 - 43791677
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta-taaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||| |||||||| ||||||||||| |  ||||||||| ||| |||| | |||| |||| | ||||||||| |||||||    
T  43791766 ctctctattgtttttgaccaataaaaagagagaaaaggtaggttgtcacaaaagttgtcactaaaaggttgttcaaatatcattactctt 43791677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36383558 - 36383618
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat 61  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| |||||||    
T  36383558 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgttat 36383618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 546360 - 546273
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    ||||||||||||||  |||||| |||||||||||||| |  ||||||| |||| |||| | |||||||| |  | |||||||||||||    
T  546360 ctctctattgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 546273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4432423 - 4432458
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaa 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  4432423 ctctctattgtttttgaccaataagaagagagaaaa 4432458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12192043 - 12192130
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactc 87  Q
    ||||| ||||||||| |||||||| || ||||||||  | ||||||||||||| || |||| || ||| | |||||||||||||||||    
T  12192043 ctctccattgtttttgaccaataaaaatagagaaaagcaaggttgtcaccaaagttattatcaattggatgtacaaatatcactactc 12192130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 13453930 - 13453848
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt-tataaatggttatacaaatatcact 83  Q
    |||||||||| ||||  ||||||||||||||||||| |  ||||||||| |||||||| || || ||||| |||||||||||||    
T  13453930 ctctctattgattttgtccaataagaagagagaaaaag-tggttgtcacaaaaattgtataaaattggttgtacaaatatcact 13453848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 38689005 - 38689092
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta-taaatggttatacaaatatcactactc 87  Q
    ||||||||||||||| |||||||| |||||||| || || ||||||| | |||||| | | ||||||||| | ||||||||| |||||    
T  38689005 ctctctattgtttttaaccaataaaaagagagagaaagaaggttgtcccaaaaattttcactaaatggttgttcaaatatcattactc 38689092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37109347 - 37109313
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaa 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  37109347 ctctctattgtttttgaccaataagaagagagaaa 37109313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 42665786 - 42665700
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    |||||||||||||  |||||| | || |||| ||||||  ||||||| |||| ||||   |||||||| ||||||||||||||||||    
T  42665786 tctctattgttttggaccaatgaaaaaagagcaaatgaaagttgtcatcaaagttgtaccaaatggttgtacaaatatcactactct 42665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 6666116 - 6666201
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactact 86  Q
    |||||| |||||||  |||||| |||||||||||||| |  ||||||| ||||||||| | ||||| ||||  | |||||||||||    
T  6666116 ctctcttttgttttggaccaatgagaagagagaaaataaaagttgtcaacaaaattgtcacaaatgattatcaatatatcactact 6666201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23048058 - 23048001
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  23048058 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgt 23048001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27307220 - 27307163
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  27307220 ctctccattgtttttgaccaataagaagagagaaaaataaggttgtcactaaagttgt 27307163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30413707 - 30413626
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta-taaatggttatacaaatatca 81  Q
    ||||| ||||||||| |||||| | |||||||||||  |  ||||||||||||||||| | ||||||| | |||||||||||    
T  30413707 ctctccattgtttttgaccaatcaaaagagagaaaagcaaagttgtcaccaaaattgtcattaaatggatgtacaaatatca 30413626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35518371 - 35518404
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaa 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  35518371 ctctctattgtttttgaccaataagaagagagaa 35518404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 40496446 - 40496535
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttc 90  Q
    ||||||||||||||  ||||||| |||||||| |||| |  ||||||| |||| || ||| | |||||| |||||||||||  |||||||    
T  40496446 ctctctattgttttggaccaataggaagagagtaaataaaagttgtcatcaaagttattagatatggttgtacaaatatcataactcttc 40496535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 14957689 - 14957721
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaa 34  Q
    |||||||||||||| ||||||||||||||||||    
T  14957689 tctctattgtttttgaccaataagaagagagaa 14957721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25997705 - 25997669
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaat 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  25997705 ctctctattgtttttgaccaataaaaagagagaaaat 25997669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 37601351 - 37601387
Alignment:
Q  51 aaaattgttataaatggttatacaaatatcactactc 87  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  37601351 aaaattgttataaattgttgtacaaatatcactactc 37601387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 156002 - 156091
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttc 90  Q
    |||| |||||||||  |||||| ||||||||||||||||| ||||||| |||| ||||   |||||||| |||| |||||||||||||||    
T  156002 ctctttattgttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactcttc 156091  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25614796 - 25614739
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  25614796 ctctccattgttttttaccaataagaagagagaaaaacaaggttgtcaccaaaattgt 25614739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 17500793 - 17500880
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    ||||| ||||||||  |||||||||||||||||||||||  ||| ||| |||| ||||   |||||||| |||| |||||||||||||    
T  17500793 ctctccattgttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactct 17500880  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 17552421 - 17552334
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    ||||| ||||||||  |||||||||||||||||||||||  ||| ||| |||| ||||   |||||||| |||| |||||||||||||    
T  17552421 ctctccattgttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactct 17552334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 31009615 - 31009529
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    ||||||||||||||  ||||||| |||||||| |||| |  |||||||| ||| |||||| | |||||| |||||||||||| ||||    
T  31009615 ctctctattgttttggaccaataggaagagagtaaataaaagttgtcactaaagttgttagatatggttgtacaaatatcacaactc 31009529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 8742479 - 8742568
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactctt 89  Q
    ||||| ||||||| | | ||||||||||||||||||  | ||||||||||||| |||| || || ||| | |||||||||||||||||||    
T  8742479 ctctccattgtttatgatcaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactctt 8742568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 33050279 - 33050360
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||||||||||||| ||||||||||||||||| ||  | ||||||||| ||| |||| || |||||| | |||||||||||    
T  33050279 ctctctattgtttttgaccaataagaagagagagaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatca 33050360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37385208 - 37385119
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactctt 89  Q
    ||||| ||||||||| ||||||||||| |||||| |  | ||||||||||||| |||| || || ||| | |||||||||||||||||||    
T  37385208 ctctcaattgtttttgaccaataagaaaagagaagaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactctt 37385119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 23761163 - 23761254
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttctt 92  Q
    |||||| |||||||  || |||| |||||||| |||| |  ||||| | |||| |||||| | ||||||||||||||||||| |||||||||    
T  23761163 ctctctcttgttttggactaataggaagagagtaaataaaagttgttatcaaagttgttagatatggttatacaaatatcacaactcttctt 23761254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27070644 - 27070557
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    |||| |||||||||  |||||| ||||||||||||||||| ||||||| |||| ||||   ||||| ||  ||| |||||||||||||    
T  27070644 ctctttattgttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatgattgcacatatatcactactct 27070557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27207669 - 27207756
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    |||| |||||||||  |||||| ||||||||||||||||| ||||||| |||| ||||   ||||| ||  ||| |||||||||||||    
T  27207669 ctctttattgttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatgattgcacatatatcactactct 27207756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32315922 - 32315957
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaa 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  32315922 ctctctattgtttttgaccaataagaagagagaaaa 32315957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35098562 - 35098515
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtca 48  Q
    ||||| |||||||||||||||| |||||||||||||||| | ||||||    
T  35098562 ctctccattgttttttaccaatgagaagagagaaaatgaagattgtca 35098515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 37149450 - 37149415
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaa 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37149450 ctctctattgttttttaccaataagaagaaagaaaa 37149415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 42118671 - 42118624
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaaaatgagggttgtcac 49  Q
    |||||||||||||| |||||||||||||||||| | || |||||||||    
T  42118671 tctctattgtttttgaccaataagaagagagaagaagaaggttgtcac 42118624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 42431819 - 42431906
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactc 87  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| |||| ||  ||||| | ||||||||||| |||||    
T  42431819 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattactc 42431906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 49089136 - 49089053
Alignment:
Q  4 tctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    |||||| ||||  |||||| ||||||||||||||||  ||||||| |||| |||| | |||| ||| |||| ||||||||||||    
T  49089136 tctattattttggaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcagaaattgttgtacatatatcactactc 49089053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7458175 - 7458208
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaa 34  Q
    ||||||||| ||||||||||||||||||||||||    
T  7458175 ctctctattattttttaccaataagaagagagaa 7458208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 8326229 - 8326310
Alignment:
Q  9 tgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactctt 89  Q
    ||||||| | ||||||||||||||||||  | | ||||||| ||| ||||||| |||||| | ||||||||||| |||||||    
T  8326229 tgtttttgatcaataagaagagagaaaaatacgattgtcactaaagttgttatgaaatggatgtacaaatatcattactctt 8326310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 26041406 - 26041487
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||| ||||||||| ||||||||||||||||||||  |  |||||||| ||| |||| || |||||| | |||||||||||    
T  26041406 ctctccattgtttttgaccaataagaagagagaaaaacaaagttgtcactaaagttgtcataaaatggatgtacaaatatca 26041487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 10014930 - 10014842
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactct 88  Q
    ||||| ||||||||| |||||||| |||||||||||  |   ||||||||||| |||| || || ||| | ||||||||||||||||||    
T  10014930 ctctccattgtttttgaccaataaaaagagagaaaaacaaaattgtcaccaaagttgtcatcaattggatgtacaaatatcactactct 10014842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23330005 - 23330058
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaatt 56  Q
    ||||||||| |||||||||||||| ||||||||||   | ||||||||||||||||    
T  23330005 ctctctattattttttaccaataaaaagagagaaa--caaggttgtcaccaaaatt 23330058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31436513 - 31436600
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||| ||||  |||||| |||||||| |||||||  ||||||| |||| ||||   |||||||| |||| ||||||||||||||    
T  31436513 ctctctatttttttagaccaatgagaagagataaaatgaaagttgtcatcaaa-ttgtatcaaatggttgtacatatatcactactctt 31436600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38978588 - 38978668
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatca 81  Q
    ||||| ||||||||| || |||||||||||||||||  | ||||||||| ||| |||| || || || | |||||||||||    
T  38978588 ctctccattgtttttgacaaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaaggatgtacaaatatca 38978668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42467300 - 42467336
Alignment:
Q  1 ctctctattgtttt-ttaccaataagaagagagaaaa 36  Q
    |||||||||||||| ||||||||||||||||||||||    
T  42467300 ctctctattgtttttttaccaataagaagagagaaaa 42467336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 1803965 - 1804054
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactctt 89  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||||||| |||| || || ||| | |||||||||||||||||||    
T  1803965 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactctt 1804054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 6435138 - 6435219
Alignment:
Q  7 attgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactc 87  Q
    ||||||||| ||||||||||||||||||||  | |||||||||||||||||| || || ||| | |||||||| ||||||||    
T  6435138 attgtttttaaccaataagaagagagaaaaacaaggttgtcaccaaaattgtcatcaattggatgtacaaataccactactc 6435219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 2333471 - 2333564
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttcttct 94  Q
    ||||||||||||||  || |||||||||||||||||| |   |||||| ||||||||||  ||||| || |||| |||||| ||||||| ||||    
T  2333471 ctctctattgttttggactaataagaagagagaaaataaaaattgtcatcaaaattgtttcaaatgattgtacatatatcagtactctttttct 2333564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 7693411 - 7693499
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||| ||||||||  ||||||||||||||||||||| |   |||||| |||| ||||   |||||||| |||| ||||||||||||||    
T  7693411 ctctccattgttttggaccaataagaagagagaaaataaaaattgtcatcaaagttgtcccaaatggttgtacatatatcactactctt 7693499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9200206 - 9200286
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatca 81  Q
    ||||||||||||||  ||||||| |||||||| |||| |  ||||||| |||| |||||| | |||||| |||||||||||    
T  9200206 ctctctattgttttggaccaataggaagagagtaaataaaagttgtcatcaaagttgttagatatggttgtacaaatatca 9200286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 11017478 - 11017566
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactct 88  Q
    ||||| ||||||||| ||||||||||||||||| ||  | ||||||||| ||| |||||||  ||||| | ||||||||||||| ||||    
T  11017478 ctctccattgtttttgaccaataagaagagagagaaacaaggttgtcactaaagttgttatggaatggatgtacaaatatcactgctct 11017566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12441623 - 12441710
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactc 87  Q
    ||||| ||||||||| ||| ||||||||||||||||  | ||||||||||||| |||| || || | | | |||||||||||||||||    
T  12441623 ctctccattgtttttaaccgataagaagagagaaaagcaaggttgtcaccaaagttgtcatcaattagatgtacaaatatcactactc 12441710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 19789035 - 19788964
Alignment:
Q  17 accaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    |||||| |||||||||||||| || ||||||| |||| ||||   |||||||| |||| |||||||||||||    
T  19789035 accaatgagaagagagaaaatcagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 19788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 30622120 - 30622207
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    ||||| ||||||||  ||||||||||||||| |||||||  ||||||| |||| ||||   |||| ||| |||| |||||||||||||    
T  30622120 ctctccattgttttggaccaataagaagagaaaaaatgaaagttgtcatcaaagttgtcccaaatagttgtacatatatcactactct 30622207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 18792407 - 18792321
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    ||||||||||||||  |||||||  ||||||| |||| |  |||||||  |||||||||| | |||||| |||||||||||| ||||    
T  18792407 ctctctattgttttgaaccaatagaaagagagtaaataaaagttgtcattaaaattgttagatatggttgtacaaatatcacaactc 18792321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3339474 - 3339393
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||||||||||||| |||||||| |||||||||||  | | ||||||| ||| |||| || |||||| | |||||||||||    
T  3339474 ctctctattgtttttgaccaataaaaagagagaaaaacaagattgtcactaaagttgtcatgaaatggatgtacaaatatca 3339393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3800690 - 3800747
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||||||||||||  |||||| ||||||||||||||||  ||||||| |||| ||||    
T  3800690 ctctctattgttttggaccaatgagaagagagaaaatgaaagttgtcaacaaagttgt 3800747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 17417210 - 17417121
Alignment:
Q  1 ctctctattgttttttaccaataagaa-gagagaaaatgagggttgtcaccaaaattgttataaat-ggttatacaaatatcactactct 88  Q
    ||||| ||||||||| | ||||||||| |||||||||  | ||||||||||||| |||| || ||| || ||||||||||||||| ||||    
T  17417210 ctctccattgtttttgatcaataagaatgagagaaaaataaggttgtcaccaaagttgtcatcaattggatatacaaatatcacttctct 17417121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 3712594 - 3712506
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||| ||||  || |||| |||||||| |||| |  |||||||  |||||||||| | |||||| |||||||||||| ||||||    
T  3712594 ctctctattattttgaacgaataggaagagagtaaataaaagttgtcattaaaattgttagatatggttgtacaaatatcacaactctt 3712506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 30796069 - 30795981
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttc 90  Q
    |||||||||||||| ||||||||||| | |||||  ||  |||||||   || |||| | |||||||  ||||||||||||||||||||    
T  30796069 tctctattgtttttgaccaataagaaaaaagaaatagaaagttgtcatacaagttgtcacaaatggtagtacaaatatcactactcttc 30795981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 154386 - 154474
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||| |||||||| ||||||||||||||  |||||||| | | ||||  ||| ||||| | |||||||||||||||||    
T  154386 ctctctattgtttttgaccaataaaaagagagaaaatgaaagttgtcacaatagttgtcttaattggttgttcaaatatcactactctt 154474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 2597135 - 2597043
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactcttctt 92  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||||||| |||| || || ||  | ||||||||||||||||||||||    
T  2597135 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattgaatgtacaaatatcactactcttctt 2597043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8074700 - 8074614
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    ||||||||||||||  |||||||||||||||||||||||  ||||||| |||| |||| | | ||| || |||| ||||||||||||    
T  8074700 ctctctattgttttgaaccaataagaagagagaaaatgaaagttgtcatcaaagttgtcaaatatgattgtacatatatcactactc 8074614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 43605644 - 43605555
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta-taaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||| |||||||||||||||||||| |  ||||||||| ||| |||| | |||| |||| | ||||||||| |||||||    
T  43605644 ctctctattgtttttgaccaataagaagagagaaaaggtaggttgtcacaaaagttgtcactaaaaggttgttcaaatatcattactctt 43605555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27631043 - 27631131
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||| |||||| | |||||||||||| |  ||||||| |||| |||| |  ||||||| |||| ||||||||||||||    
T  27631043 ctctctattgtttttgaccaatgaaaagagagaaaataatagttgtcatcaaagttgtcaccaatggttgtacatatatcactactctt 27631131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 35595307 - 35595358
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaa 53  Q
    |||| ||||||||||||||||||||||||||||||  | |||||||||||||    
T  35595307 tctccattgttttttaccaataagaagagagaaaagcaaggttgtcaccaaa 35595358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 42026473 - 42026556
Alignment:
Q  6 tattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    |||||||||| |||||||| |||||||||||| |  ||||||| ||||||||| |  |||| ||||||| |||| |||||||||    
T  42026473 tattgtttttgaccaataaaaagagagaaaataatagttgtcatcaaaattgtcaccaatgattatacatatattactactctt 42026556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20995033 - 20994976
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||||||||||||| |||||||||||||||||||| |  ||||||||| ||| ||||    
T  20995033 ctctctattgtttttgaccaataagaagagagaaaaggtaggttgtcacaaaagttgt 20994976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 28623100 - 28623009
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaa---tggttatacaaatatcactactctt 89  Q
    ||||| ||||||||| ||||||||||| ||||||||  | ||||||||||||| |||| || ||   ||| | |||||||||||||||||||    
T  28623100 ctctccattgtttttgaccaataagaaaagagaaaagcaaggttgtcaccaaagttgtcatcaatattggatgtacaaatatcactactctt 28623009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30927906 - 30927825
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| |||| || |||||| | |||||||||||    
T  30927906 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatca 30927825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 324055 - 323975
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatca 81  Q
    ||||||||||||||  |||||||||||||||| |||| |  ||||||| |||| |||||| | |||||| |||| ||||||    
T  324055 ctctctattgttttggaccaataagaagagagtaaataaaagttgtcatcaaagttgttagatatggttgtacagatatca 323975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 29910187 - 29910099
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||  |||||| |||||||||||||| |  ||||||| |||| |||| | |||||||| |  | ||||||||||||||    
T  29910187 ctctctattgttttgaaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcaaaaatggttgtcaatatatcactactctt 29910099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 37562115 - 37562031
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactac 85  Q
    |||| ||||||||| ||||||||||||||||||||  | |||||||| |||| |||| || || ||| | |||||||||||||||    
T  37562115 tctccattgtttttgaccaataagaagagagaaaaacaaggttgtcatcaaagttgtcatcaattggatgtacaaatatcactac 37562031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 20284813 - 20284884
Alignment:
Q  11 ttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||||| |||||||||||||||||| || ||||||||| ||| |||| || |||||||| | |||||||||    
T  20284813 ttttttatcaataagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatca 20284884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 21071442 - 21071513
Alignment:
Q  11 ttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||||| |||||||||||||||||| || ||||||||| ||| |||| || |||||||| | |||||||||    
T  21071442 ttttttatcaataagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatca 21071513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8888348 - 8888430
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta-ta-aatggttatacaaatatca 81  Q
    ||||| ||||||||| |||||||||||  |||||||| | ||||||||||||| |||| | || ||||| |||||||||||||    
T  8888348 ctctccattgtttttaaccaataagaaatgagaaaatcaaggttgtcaccaaagttgtcactataatggatatacaaatatca 8888430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 23258134 - 23258216
Alignment:
Q  7 attgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||| |||||| | |||||||||||     |||||||| |||||||||  |||||||| | |||||||||||||||||    
T  23258134 attgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaaattgtttcaaatggttgttcaaatatcactactctt 23258216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6825252 - 6825195
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||| ||||||| ||||    
T  6825252 ctctccattgtttttaaccaataagaagagagaaaaataaggttgacaccaaagttgt 6825195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 33817253 - 33817334
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||| ||||||||| |||||||| |||||||||||  | | ||||||| ||||||||||| |||| | | |||||||||||    
T  33817253 ctctccattgtttttgaccaataaaaagagagaaaaacaagattgtcactaaaattgttatgaaatagatgtacaaatatca 33817334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 43587737 - 43587818
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta-taaatggttatacaaatatca 81  Q
    ||||| |||| ||||||||||| | |||||||||||  |  |||||||||||| |||| | ||||||| |||||||||||||    
T  43587737 ctctccattgctttttaccaatcaaaagagagaaaaacaaagttgtcaccaaagttgtcattaaatggatatacaaatatca 43587818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 7129636 - 7129716
Alignment:
Q  8 ttgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    |||||||| ||||||||||||||||||||  |  ||||||| |||| ||||   |||||  | ||||||||||||||||||    
T  7129636 ttgtttttgaccaataagaagagagaaaaacaaagttgtcatcaaagttgtatgaaatgaatgtacaaatatcactactct 7129716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 33511698 - 33511730
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaa 34  Q
    |||||||||||||| ||||||||||||||||||    
T  33511698 tctctattgtttttgaccaataagaagagagaa 33511730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 4820252 - 4820304
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaa 54  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  4820252 tctctattgttttttaccaataagaagagagaaaatgtaagttgtcaccaaaa 4820304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 16292225 - 16292134
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttctt 92  Q
    ||||||||||||||| |||||||| ||| |||||||| |  ||||||  |||| |||| || ||||||| |||| |||||||||||||||||    
T  16292225 ctctctattgtttttgaccaataaaaagcgagaaaataatagttgtcttcaaagttgtcatcaatggttgtacatatatcactactcttctt 16292134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 17489444 - 17489533
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactctt 89  Q
    ||||| ||||||||| ||||||||||||||||||||  | | ||||||||||| |||| || || ||| | |||||||||||||||||||    
T  17489444 ctctccattgtttttgaccaataagaagagagaaaaacaagattgtcaccaaagttgtcatcaattggatgtacaaatatcactactctt 17489533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22203803 - 22203891
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactct 88  Q
    |||||| |||||||| |||||||||||||||||||| || ||||||||| ||||||   || |||||||| ||||||||| | ||||||    
T  22203803 ctctcttttgtttttgaccaataagaagagagaaaaggaaggttgtcacaaaaattaccatcaaatggttgtacaaatattattactct 22203891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30301306 - 30301394
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||  || ||| ||||||||| ||||||  ||||||| |||| |||||| | |||||| |||| ||||||||||||||    
T  30301306 ctctctattgttttggacaaatgagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatcactactctt 30301394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27340965 - 27341052
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    ||||||||||||||  |||||||| ||||||| ||||||  ||||||| |||||||||   ||||| || |||| |||||||||||||    
T  27340965 ctctctattgttttggaccaataaaaagagagcaaatgaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 27341052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 42825210 - 42825297
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    ||||||||||||||  |||||| |||||||||||||| |  ||||||| ||||||||| | |||||||| |  | |||||||||||||    
T  42825210 ctctctattgttttggaccaatgagaagagagaaaataaaagttgtcaacaaaattgtcacaaatggttgtcaatatatcactactct 42825297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 3155098 - 3155184
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    ||||||||| ||||  ||||||||||| |||||||||||  |||||||  ||| |||| ||| ||| || |||||||||||||||||    
T  3155098 ctctctattattttggaccaataagaatagagaaaatgaaagttgtcattaaagttgtcatatatgattgtacaaatatcactactc 3155184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 8959256 - 8959345
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactctt 89  Q
    ||||| ||||||||| |||||||| |||||||||||  | ||||||| ||||| |||| || || ||| | |||||||||||||||||||    
T  8959256 ctctccattgtttttgaccaataaaaagagagaaaaacaaggttgtcgccaaagttgtcatcaattggatgtacaaatatcactactctt 8959345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 25345434 - 25345515
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    |||| |||||||||| ||||||||||||||||||||  | | ||||||| |||||||||||  ||||| | |||||||||||    
T  25345434 ctctttattgtttttgaccaataagaagagagaaaaataagattgtcactaaaattgttatggaatggatgtacaaatatca 25345515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18638816 - 18638728
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||| ||||  ||||||||||| ||||||||| |  ||||||| |||| ||||   |||||||| |||| ||||||||||||||    
T  18638816 ctctctattattttggaccaataagaaaagagaaaataaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactctt 18638728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1760457 - 1760492
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaa 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  1760457 ctctctattgtttttgaccaataagaagagagaaaa 1760492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29803319 - 29803378
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta 60  Q
    ||||||||||||||| |||||||| ||||||||||| |  |||||||| |||| ||||||    
T  29803319 ctctctattgtttttgaccaataataagagagaaaaaggaggttgtcatcaaagttgtta 29803378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41210489 - 41210454
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaa 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41210489 ctctctattgtttttgaccaataagaagagagaaaa 41210454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3723051 - 3722965
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    ||||| ||||||||  |||||||| ||||||||||||||  ||||||| |||| ||||   |||||||| |||| |||||| |||||    
T  3723051 ctctccattgttttggaccaataaaaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcattactc 3722965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 21062878 - 21062967
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttct 91  Q
    ||||||||||||||   |||||||||| |||| ||||||  ||||||| |||||||||   |||||||| |||| |||||| |||||||||    
T  21062878 ctctctattgttttgggccaataagaaaagagcaaatgaaagttgtcatcaaaattgtaccaaatggttgtacatatatca-tactcttct 21062967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39788695 - 39788605
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaat-ggttatacaaatatcactactcttc 90  Q
    ||||| ||| ||||| || |||||||||||||||||  | | ||||||||||| || | || ||| |||| ||||||||||||||||||||    
T  39788695 ctctccattatttttgacgaataagaagagagaaaagcaagattgtcaccaaagttatcatcaattggttgtacaaatatcactactcttc 39788605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4954562 - 4954623
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttata 62  Q
    ||||| ||||||||| ||| ||||||||||||||||  | ||||||||| ||| ||||||||    
T  4954562 ctctccattgtttttgacccataagaagagagaaaaacaaggttgtcactaaagttgttata 4954623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11464098 - 11464017
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||| ||||||||| |||||||| |||||||||||  | ||||||||| ||| |||||||  ||||| | |||||||||||    
T  11464098 ctctccattgtttttgaccaataaaaagagagaaaaacaaggttgtcactaaagttgttatggaatggatgtacaaatatca 11464017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 12779540 - 12779495
Alignment:
Q  42 gttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    |||||||| |||||||||  |||||||||| |||||||||||||||    
T  12779540 gttgtcacaaaaattgttgaaaatggttattcaaatatcactactc 12779495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 14914466 - 14914555
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttc 90  Q
    ||||| ||||||||| ||||||||||||||| ||||  |  ||||||| |||| || |   |||||| | ||||||||||||||||||||    
T  14914466 ctctccattgtttttgaccaataagaagagataaaaacaaagttgtcatcaaagttatatgaaatggatgtacaaatatcactactcttc 14914555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 15622140 - 15622197
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  15622140 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgt 15622197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 20125486 - 20125543
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    |||||| |||||||| |||||| ||||||||||||||||  ||||||| |||| ||||    
T  20125486 ctctctgttgtttttgaccaatgagaagagagaaaatgaaagttgtcatcaaagttgt 20125543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 28501713 - 28501770
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  28501713 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgt 28501770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 30574352 - 30574295
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  |  |||||||| ||||||||    
T  30574352 ctctccattgtttttgaccaataagaagagagaaaaacaaagttgtcactaaaattgt 30574295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33823669 - 33823612
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  33823669 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgt 33823612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35616776 - 35616743
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaa 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  35616776 ctctctattgtttttgaccaataagaagagagaa 35616743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 12401289 - 12401345
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    |||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  12401289 tctccattgtttttgaccaataagaagagagaaaaataaggttgtcactaaagttgt 12401345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22920467 - 22920419
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcac 49  Q
    ||||| ||||||||| ||||||||||||||||||||  | |||||||||    
T  22920467 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcac 22920419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 33626613 - 33626525
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||  || |||| |||||||| |||| |  |||||||  ||| |||||| | |||||| |||||||||||| ||||||    
T  33626613 ctctctattgttttagactaataggaagagagtaaataaaagttgtcattaaagttgttagatatggttgtacaaatatcacaactctt 33626525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34952380 - 34952344
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaat 37  Q
    ||||||||||||||  |||||||||||||||||||||    
T  34952380 ctctctattgttttggaccaataagaagagagaaaat 34952344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 23906962 - 23906874
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactct 88  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||||||| |||| || || ||| | ||||||||||||||||||    
T  23906962 ctctccattgtttttgaccaataagaagagagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactct 23906874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 54233476 - 54233389
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactc 87  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||||||| |||| || || ||| | |||||||||||||||||    
T  54233476 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 54233389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 43460484 - 43460573
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta-taaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||| ||||||||||||||||||||||| || |||| | ||| |||| |  ||| |||| |||||||||||||| ||||    
T  43460484 ctctctattgtttttgaccaataagaagagagaaaatgaaggctgtcccaaaagttgtcacaaaaaggttgtacaaatatcactattctt 43460573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 44910800 - 44910857
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||||||||||||| ||||||||||||||||||||||   |||||||| ||||||||    
T  44910800 ctctctattgtttttgaccaataagaagagagaaaatgtaagttgtcacaaaaattgt 44910857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 11574656 - 11574708
Alignment:
Q  7 attgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtt 59  Q
    ||||||||| ||||||||||||||||||||| | ||||||||||||| |||||    
T  11574656 attgtttttgaccaataagaagagagaaaattaaggttgtcaccaaagttgtt 11574708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 18713699 - 18713786
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    ||||||||| ||||  |||||| |||||||||| |||||  |||||||  |||||||||  |||||||| |||| |||||||||||||    
T  18713699 ctctctattattttggaccaatgagaagagagagaatgaaagttgtcattaaaattgttccaaatggttgtacatatatcactactct 18713786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 2009750 - 2009828
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatat 79  Q
    ||||| ||| ||||| ||||||||||||||||||||  | ||||||||||||| |||| |||||| | | |||||||||    
T  2009750 ctctccattatttttgaccaataagaagagagaaaagcaaggttgtcaccaaagttgtcataaattgatgtacaaatat 2009828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 51717537 - 51717623
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactact 86  Q
    ||||| ||| ||||||||||| ||||||||||||||  | ||||||||||||| |||| || || ||| | ||||||||||||||||    
T  51717537 ctctccattattttttaccaacaagaagagagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactact 51717623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 11327204 - 11327285
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||||||||||||| ||||||||||||||||| ||  | ||||||||| ||| |||| || |||||| | |||||||||||    
T  11327204 ctctctattgtttttgaccaataagaagagagagaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatca 11327285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 12094365 - 12094280
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactact 86  Q
    ||||||||||||||  |||||||||||||||| ||||||    ||||| |||| |||| ||| | |||| ||||||||||||||||    
T  12094365 ctctctattgttttagaccaataagaagagagcaaatgaaatgtgtcatcaaagttgtcatagacggttgtacaaatatcactact 12094280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 32931893 - 32931812
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatca 81  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||| | |||||| | |||||||||||    
T  32931893 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgttgtgaaatggatgtacaaatatca 32931812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 47683886 - 47683974
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgtta-taaatggttatacaaatatcactactct 88  Q
    ||||||| ||||||| |||||||||||||||||||  || ||||||| | ||| |||| |  |||||||| ||||||||||| ||||||    
T  47683886 ctctctaatgtttttgaccaataagaagagagaaagagaaggttgtctcaaaagttgtcacaaaatggttgtacaaatatcattactct 47683974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 622434 - 622347
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactct 88  Q
    ||||||||||||||  |||||| |||||||||||||| |  ||||||| |||| |||| | |||||||| |  | |||||||||||||    
T  622434 ctctctattgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 622347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34021438 - 34021403
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaa 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34021438 ctctctattgtttttgaccaataagaagagagaaaa 34021403  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 35425647 - 35425556
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactcttctt 92  Q
    ||||||||||||||  | |||| ||||||||| ||||||  ||||||| ||||  |||   ||||| ||||||| |||||||||||||||||    
T  35425647 ctctctattgttttggatcaatgagaagagagcaaatgaaagttgtcatcaaagatgtaccaaatgattatacatatatcactactcttctt 35425556  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 12762915 - 12762861
Alignment:
Q  4 tctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||||||||||||||||||| ||||||||||| ||  |||||||  ||||||||    
T  12762915 tctattgttttttaccaataaaaagagagaaaaagaaagttgtcataaaaattgt 12762861  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 46323089 - 46323043
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaaaatgagggttgtca 48  Q
    |||||||||||||| |||||||||||||| |||||||| | ||||||    
T  46323089 tctctattgtttttaaccaataagaagagggaaaatgaagtttgtca 46323043  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 1208047 - 1208128
Alignment:
Q  7 attgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactc 87  Q
    |||||||||||  |||||||||||||||||| |  |||||||||||| |||  || || ||| | |||||||||||||||||    
T  1208047 attgttttttattaataagaagagagaaaatcaaagttgtcaccaaagttgacatcaattggatgtacaaatatcactactc 1208128  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7039206 - 7039173
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaa 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  7039206 ctctctattgtttttgaccaataagaagagagaa 7039173  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 7867678 - 7867637
Alignment:
Q  7 attgttttttaccaataagaagagagaaaatgagggttgtca 48  Q
    |||||||||||||||| | |||||||||||||| ||||||||    
T  7867678 attgttttttaccaatgaaaagagagaaaatgaaggttgtca 7867637  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 13159757 - 13159814
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  13159757 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgt 13159814  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34900736 - 34900793
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||||||| ||||||||||||||||||| |||||| |  ||||||||| ||| ||||    
T  34900736 ctctctattattttttaccaataagaagaaagaaaaggtaggttgtcacaaaacttgt 34900793  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35756076 - 35756133
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  |  |||||||||||| ||||    
T  35756076 ctctccattgtttttaaccaataagaagagagaaaaacaaagttgtcaccaaagttgt 35756133  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36819052 - 36819109
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  36819052 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgt 36819109  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 53932360 - 53932279
Alignment:
Q  7 attgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttat-aaatggttatacaaatatcactactc 87  Q
    ||||||||| || |||||||||| ||||||  | ||||||||||||| |||| || || ||| | |||||||||||||||||    
T  53932360 attgtttttgactaataagaagatagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 53932279  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4208203 - 4208115
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    |||||||||| |||  || ||| |||||| |||||||||  |||||||  |||||||| | | |||||| |||| ||||||||||||||    
T  4208203 ctctctattgatttgcactaatgagaagaaagaaaatgaaagttgtcaataaaattgtcacagatggttgtacatatatcactactctt 4208115  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 23920393 - 23920481
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    ||||||||||||||  ||||||| |||||||| |||| |   ||||||  ||| |||||| | |||||| |||||||||||| ||||||    
T  23920393 ctctctattgttttggaccaataggaagagagtaaataaaaattgtcattaaagttgttacatatggttgtacaaatatcacaactctt 23920481  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28884576 - 28884612
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaat 37  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  28884576 ctctccattgtttttgaccaataagaagagagaaaat 28884612  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37585527 - 37585575
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcac 49  Q
    |||| |||||||||| |||||||||||||||||||| |  |||||||||    
T  37585527 ctctttattgtttttgaccaataagaagagagaaaaggtaggttgtcac 37585575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44972829 - 44972877
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcac 49  Q
    ||||||||||||||  ||||||||||| |||||||||||  ||||||||    
T  44972829 ctctctattgttttggaccaataagaaaagagaaaatgaaagttgtcac 44972877  T

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Target: scaffold0193 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24769 - 24824
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaatt 56  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||||||    
T  24769 ctctccattgtttttaaccaataagaagagagaaaaataaggttgtcactaaaatt 24824  T

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Target: scaffold0511 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11734 - 11820
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactc 87  Q
    ||||||||||||||  |||||||  ||||||| |||| |  |||||||  |||||||||| | |||||| |||||||||||| ||||    
T  11734 ctctctattgttttgaaccaatagaaagagagtaaataaaagttgtcattaaaattgttagatatggttgtacaaatatcacaactc 11820  T

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Target: scaffold0514 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1471 - 1414
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  |  |||||||| ||||||||    
T  1471 ctctccattgtttttgaccaataagaagagagaaaaacaaagttgtcactaaaattgt 1414  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 204420 - 204387
Alignment:
Q  3 ctctattgttttttaccaataagaagagagaaaa 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  204420 ctctattgtttttgaccaataagaagagagaaaa 204387  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 147231 - 147174
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgt 58  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||||||||| ||| ||||    
T  147231 ctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgt 147174  T

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Target: scaffold0260 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 21385 - 21469
Alignment:
Q  2 tctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactact 86  Q
    |||||||||||||| || |||||||||| ||| ||  | ||||||| | | | |||| |||||||||| || |||||||||||||    
T  21385 tctctattgtttttaactaataagaagatagagaaaaaaggttgtctcaatagttgtcataaatggttgtataaatatcactact 21469  T

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Target: scaffold0238 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 16487 - 16575
Alignment:
Q  1 ctctctattgttttttaccaataagaagagagaaaatgagggttgtcaccaaaattgttataaatggttatacaaatatcactactctt 89  Q
    |||||||||||| |  |||||| |||| ||||||||| |  ||||||| |||| |||| |||||||||| |  | ||||||||||||||    
T  16487 ctctctattgttatggaccaatgagaatagagaaaataaaagttgtcaacaaagttgtcataaatggttgtcaatatatcactactctt 16575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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