View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5270_low_57 (Length: 223)

Name: NF5270_low_57
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5270_low_57
NF5270_low_57
[»] chr3 (2 HSPs)
chr3 (1-223)||(42232487-42232709)
chr3 (42-72)||(42232899-42232929)
[»] chr8 (1 HSPs)
chr8 (1-223)||(28945942-28946164)
[»] chr4 (1 HSPs)
chr4 (1-223)||(34823305-34823527)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42232709 - 42232487
Alignment:
Q  1 acacactcttcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttcccct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  42232709 acacactcttcctccaatttctccgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctcttcccgcaatttcctcttcccct 42232610  T
Q  101 tagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42232609 tagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgt 42232510  T
Q  201 tatcctcacattcctcggctcct 223  Q
     ||||||||||||||||||||||    
T  42232509 catcctcacattcctcggctcct 42232487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 42232929 - 42232899
Alignment:
Q  42 acaattctctttaccatctccatcaccaaca 72  Q
    |||||||||||||||||||||||||||||||    
T  42232929 acaattctctttaccatctccatcaccaaca 42232899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28945942 - 28946164
Alignment:
Q  1 acacactcttcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttcccct 100  Q
    |||||||||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||| ||| || |||| |||||||||||||    
T  28945942 acacactcttcctccaatttctccttttcttcagcatcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttcccct 28946041  T
Q  101 tagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgt 200  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  28946042 tagcacaacccctcgttttctttttctcaacattctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgt 28946141  T
Q  201 tatcctcacattcctcggctcct 223  Q
     ||||||||| ||||||||||||    
T  28946142 catcctcacactcctcggctcct 28946164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34823305 - 34823527
Alignment:
Q  1 acacactcttcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttcccct 100  Q
    |||||||||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||| ||| || |||| |||||||||||||    
T  34823305 acacactcttcctccaatttctccttttcttcagcatcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttcccct 34823404  T
Q  101 tagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgt 200  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  34823405 tagcacaacccctcgttttctttttctcaacattctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgt 34823504  T
Q  201 tatcctcacattcctcggctcct 223  Q
     ||||||||| ||||||||||||    
T  34823505 catcctcacactcctcggctcct 34823527  T

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