View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_6 (Length: 516)
Name: NF5270_low_6
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 238 - 513
Target Start/End: Complemental strand, 13410622 - 13410348
Alignment:
| Q |
238 |
tcatttaaattaccttcagggtgagtttcctctcaatttcattgcattttgattttttccaaatttctattcccaaaccttaactccttttgaacacaaa |
337 |
Q |
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| T |
13410622 |
tcatttaaattaccttcagggtgagtttcctctcaatttcattgcattttgattttttccaaatttctattcccaaaccttaacttcgtttgaacacaaa |
13410523 |
T |
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| Q |
338 |
ttttgatgtttcatatactctacttttctggcttcttataggaacaagtttcagcctttgaatgatccataagtaaacaaaacactgcaatcccttggag |
437 |
Q |
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| T |
13410522 |
ttttgatgtttcagatactctacttttctgg-ttcttatatgaacaagtttcagcctttgaatgatccataagtaaacaaaacactgcaattccttggag |
13410424 |
T |
|
| Q |
438 |
gggcagaccttagtctctcttatgataggaaaagttgtgtactaccaatactttacgggcatttttaatctcatac |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
13410423 |
gggcagaccttagtctctcttatgataggaaaagttgtgtactaccaatacttcactggcatttttaatctcatac |
13410348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 13410847 - 13410646
Alignment:
| Q |
35 |
ttatgcttatagaattcacaagtattctgaagcgcagtggtaaatggtttcttggatggattataaatggcatattacttcaaaaagtaagatattctaa |
134 |
Q |
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| T |
13410847 |
ttatgcttatagaattcacaagtattctgaagcgcagtggtaaatggtttcttggataaattataaatggcatattacttcaaaaagtaagatattctaa |
13410748 |
T |
|
| Q |
135 |
ctcaattcttttatctgcatattttatcactcttggtttcaaaattaacttgttttctctcgtccactttccttgaaacatccatctttaatgccaccat |
234 |
Q |
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| T |
13410747 |
ctcaattcttttatctgcatattttatcactcttggttac-aaattaacttgttttctctcgtccactttccttgaaacatccatcttgaatgccaccgt |
13410649 |
T |
|
| Q |
235 |
cta |
237 |
Q |
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||| |
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| T |
13410648 |
cta |
13410646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 238 - 513
Target Start/End: Original strand, 3276313 - 3276586
Alignment:
| Q |
238 |
tcatttaaattaccttcagggtgagtttcctctcaatttcattgcattttgattttttccaaatttctattcccaaaccttaactccttttgaacacaaa |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
3276313 |
tcatttaaattaccttcagggtgagtttcctctcaatttcattgcatttt-attgcttccaaatttttattcccaaaccataactccttttgaacacaaa |
3276411 |
T |
|
| Q |
338 |
ttttgatgtttcatatactctacttttctggcttcttataggaacaagtttcagcctttgaatgatccataagtaaacaaaacactgcaatcccttggag |
437 |
Q |
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||||||||||||| ||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
3276412 |
ttttgatgtttcagatactctacttttctgg-ttcttacatgaacaagtttcaacctttgaatgatccataagtaaacaaaacgctgcaattccttggag |
3276510 |
T |
|
| Q |
438 |
gggcagaccttagtctctcttatgataggaaaagttgtgtactaccaatactttacgggcatttttaatctcatac |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3276511 |
gggcagaccttagtctctcttatgataggaaaagttgtgtactgccaatactttacgggcatttttaatctcatac |
3276586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 3276153 - 3276289
Alignment:
| Q |
101 |
atggcatattacttcaaaaag-taagatattctaactcaattcttttatctgcatattttatcactcttggtttcaaaattaacttgttttctctcgtcc |
199 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |
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| T |
3276153 |
atggcatattacttcaaaaaggtaagatattctaactcaattcttttatctgcatattttatcactcttggttac-aaattaacttgttttctctcttcc |
3276251 |
T |
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| Q |
200 |
actttccttgaaacatccatctttaatgccaccatcta |
237 |
Q |
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| T |
3276252 |
actttccttgaaacatccatctttaatgccacaatcta |
3276289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 45531801 - 45531848
Alignment:
| Q |
14 |
atcttataattgtacctcatgttatgcttatagaattcacaagtattc |
61 |
Q |
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| T |
45531801 |
atcttataattgtacctcatgtcatgcttatagaattcacaagtattc |
45531848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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