View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_7 (Length: 511)
Name: NF5270_low_7
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 41892285 - 41891927
Alignment:
| Q |
11 |
cacagatagtcaaataaccaaaatgtgagtccgatactattatgccttggattacacctatgacttcactgtctcatcaggtgacagctcaagaaaagaa |
110 |
Q |
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| T |
41892285 |
cacagatagtcaaataaccaaaatgtgagtccgatactattatgccttggattacacctatgacttcactgtctcatcaggtgacagctcaagaaaagaa |
41892186 |
T |
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| Q |
111 |
ctgaaacatgttcagggttcgggaacataccttcaaaagtgagacattaaatttcaagggaacatcatttatagaaggaattttataagctccaggtcca |
210 |
Q |
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| T |
41892185 |
ctgaaacatgttcagggttcgggaacataccttcaaaagtgagacattaaatttcaagggaacatcatttatagaaggaattttataagctccaggtcca |
41892086 |
T |
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| Q |
211 |
caagtgttaagccacccagaggggatccatttatgtgctttatctccccatttaagttcttctaaagcaacccaacccaaaccttgaataaaagctcctt |
310 |
Q |
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| T |
41892085 |
caagtgttaagccacccagaggggatccatttatgtgctttatctccccatttaagttcttctaaagcaacccaacccaaaccttgaataaaagctcctt |
41891986 |
T |
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| Q |
311 |
cgatctgtgaacataaatagcaatgaattaaacatgaatatatcatgcattgatatatt |
369 |
Q |
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| T |
41891985 |
cgatctgtgaacataaatagcaatgaattaaacatgaatatatcatgcattgatatatt |
41891927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 408 - 475
Target Start/End: Complemental strand, 41891888 - 41891821
Alignment:
| Q |
408 |
gtgggaacttgtaattcagaggaaatttttgagaattttgaatattctacaaccaggaaaacatcttt |
475 |
Q |
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| T |
41891888 |
gtgggaacttgtaattcagaggaaatttttgagaattttgaatattctacaaccaggaaaacatcttt |
41891821 |
T |
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