View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5270_low_9 (Length: 479)
Name: NF5270_low_9
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 217 - 405
Target Start/End: Original strand, 22781029 - 22781217
Alignment:
| Q |
217 |
acgtaatggaattctcaatacacactttccggccaatttctcaagtctttttaagtcaagtcaactaccgtgatgaacacacccaatggacaaaattact |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22781029 |
acgtaatggaattctcaatacacactttccggccaatttctcaagtctttttaagtcaagtcaactaccgtaatgaacacacccaatggacaaaattact |
22781128 |
T |
|
| Q |
317 |
atagaattccacatgttacataatataatacatttcatattcattcattcattcttattctgcttaattcatcctaaaaatttttaatg |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22781129 |
atagaattccacatgttacataatataatacatttcatattcattcattcattcttattctgcttaattcatcctaaatttttttaatg |
22781217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 22780944 - 22781034
Alignment:
| Q |
85 |
atacaatcaaccacaaccacatatgaactgtgtgattaattttgtgcacaaaattgtaccgtgtgcatctgtggtggactctacaatgtaa |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22780944 |
atacaatcaaccacaaccacatatgaactgtgtgattaattttgtgcacaaaattgtaccgtgtgcatctgtggtggactctacaacgtaa |
22781034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 272
Target Start/End: Original strand, 22769534 - 22769692
Alignment:
| Q |
120 |
ttaattttgtgcacaaaattgtaccgtgtgcatctgtggtggactctacaatgtaaacttggggctccatgaaatggacaattagtacaacaaagtcacg |
219 |
Q |
| |
|
|||||| |||||||||||||||||| | | || ||||||||||||| | ||||||||||| ||||||||||||||||| |||||| |||||||| |
|
|
| T |
22769534 |
ttaattgtgtgcacaaaattgtaccttatcaatttgtggtggactctgcgatgtaaacttgtggctccatgaaatggactattagt---gtaaagtcaca |
22769630 |
T |
|
| Q |
220 |
taatgg---------aattctcaatacacactttccggccaatttctcaagtctttttaagt |
272 |
Q |
| |
|
||| || |||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
22769631 |
taagggctccaataaaattctcaatacactctttgtggccaatttctcaagtctttttaagt |
22769692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 15528530 - 15528581
Alignment:
| Q |
154 |
tgtggtggactctacaatgtaaacttggggctccatgaaatggacaattagt |
205 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
15528530 |
tgtgatggactctacaatgtaaactttgggttccatgaaatggacaattagt |
15528581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University