View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5271-Insertion-1 (Length: 603)
Name: NF5271-Insertion-1
Description: NF5271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5271-Insertion-1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 191 - 603
Target Start/End: Original strand, 6357216 - 6357614
Alignment:
| Q |
191 |
aataaataaaaagatcttgttaatgagtgattagctttggcaaaataaagctac--tgcatattaatggagatttttaatgcatcaggtaacaacgccga |
288 |
Q |
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| T |
6357216 |
aataaataaaaaggtcttgttaacgggtgattagctttggcaaaataaagctacactacatattaatggagacttctaatgtatcagataacaacgccaa |
6357315 |
T |
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| Q |
289 |
cgaaatacaagacaatgactcgtgtatcattataagatattttgtatgattagctttggcaagaatacccacacaagagtttccttctccgaggatgtgt |
388 |
Q |
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| T |
6357316 |
cgaaagacaagacaatgactcgtgtaccattataagagattttgtatgattagctttggcaagaatacccacacaaga----------------atgtgg |
6357399 |
T |
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| Q |
389 |
ttgatggagatatttcaatcctcaatcaaagagcttttgaattaatttcaagaggttaccatattgatgaaacctcagagtttccttcgccactaattgt |
488 |
Q |
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| T |
6357400 |
ttaatggagatatttcaatcctcaatcaaagagcttttgaattaatttcaagaggttaccatattgatgaaacctcagagtttccttcgccactaattgt |
6357499 |
T |
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| Q |
489 |
acgacatggaaggtgttagaaaaatccgagagtgattcatattaacaacacttgaatctttgtatgtaaaatattgaaaaaactcatactgtcataaaaa |
588 |
Q |
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| T |
6357500 |
acgacatgaaaggtgtaagaaaaatccgagagtgattcatattaacaacacttgaatctttgtatgtaaaatattgaaaaaactcatactatcataaaaa |
6357599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 5 - 163
Target Start/End: Original strand, 6356114 - 6356269
Alignment:
| Q |
5 |
acaatatcaatatgtttcaacgttcaagaactatccactggcctagtggatgctcttatacttaggctaatcttgaaattatagaatacgtcactcgtgt |
104 |
Q |
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| T |
6356114 |
acaatatcaatatgtttcaacgttcaagaactatccactggcctagtggttgctcttgtacttaggctaatcttgaaattatagaatacatcactcgtgt |
6356213 |
T |
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| Q |
105 |
tctgcgtgggttatcgtttgtctttttattagttacatgatgagaggaagataaaaatt |
163 |
Q |
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| T |
6356214 |
actgcgtgggttatcgttcgtctttttattagttac---atgagaggaagataaaaatt |
6356269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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