View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5271_high_2 (Length: 464)
Name: NF5271_high_2
Description: NF5271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5271_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Complemental strand, 28667886 - 28667438
Alignment:
| Q |
20 |
gcaactgagtgtccaagaatctgatagtgggagtaaaagtctgggagccattcgtactccaccgcaacgggaaagcgaaaccttccctttcaacatcggt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28667886 |
gcaactgagtgtccaagaatctgatagtgggagaaaaagtctgggtgccattcgtactccacaacaacgggaaagcgaaaccttccctttcaacattggt |
28667787 |
T |
|
| Q |
120 |
ctcataaaaaatacgacgagaaaatctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga-------catcgataatgagaggtgcgc |
212 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28667786 |
ctcataaaaaatacaacgagaaaatctatgtccactagcacccgcgtgtaatggccgaaggtgcgtttctgagttgcggcatcgataatgagaggtgcgc |
28667687 |
T |
|
| Q |
213 |
ctaatgctccagcatcttccatgagtgttccgtttaaccatttctcatgtggtaagtccagaagttgaatccaaacctacgcatgtgtgagacactgaaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| | |
|
|
| T |
28667686 |
ctaatgctccagcatcttccatgagtgctccgtttaaccattactcctgtggtaagtccagaagttgaatccaaacctgcgcatgtgtgagacgctgaga |
28667587 |
T |
|
| Q |
313 |
gtacttgttgaaatccttggctcatctagaaagcctcaacagtcccaacttcaaatttacaatccccatagcaagagatgcacgcacatcttcatctgtg |
412 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28667586 |
gtacttgttgaaatccttggcccatctagaaagcctcaacagtctcaacttcaaatttacaatccccatagcaagagatgcacacacatcttcatctgtg |
28667487 |
T |
|
| Q |
413 |
gaggaagaaaattcataaaatccacgcccaagagaaatcagtttccatg |
461 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
28667486 |
gaggaagaaaattcataaaatccacacccaagagaaatcagttgccatg |
28667438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 17705285 - 17705212
Alignment:
| Q |
119 |
tctcataaaaaatacgacgagaaaa-tctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
191 |
Q |
| |
|
|||||||||||| |||||||| || | |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17705285 |
tctcataaaaaaaccgacgagagaagtttatgtccaccagcacccgcgcataatggccaaaggtgcgtttctga |
17705212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 369
Target Start/End: Complemental strand, 17111240 - 17111128
Alignment:
| Q |
257 |
tcatgtggtaagtccagaagttgaatccaaacctacgcatgtgtgagacactgaaagtacttgttgaaatccttggctcatctagaaagcctcaacagtc |
356 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||| ||||||||||||| |||| |||| ||||| |||||||||| |||| ||||||| |||||| | |
|
|
| T |
17111240 |
tcatgtggcaagtccagaagccggatccaaacctgtgcatgtgtgagacgctgagagtatttgttaaaatccttggaccatcgggaaagccgcaacaggc |
17111141 |
T |
|
| Q |
357 |
ccaacttcaaatt |
369 |
Q |
| |
|
|| ||| |||||| |
|
|
| T |
17111140 |
ccgactgcaaatt |
17111128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 23869334 - 23869381
Alignment:
| Q |
144 |
tctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
191 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23869334 |
tctatatccaccagcacccgcacataatggccaaaggtgcgtttctga |
23869381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 25276207 - 25276248
Alignment:
| Q |
150 |
tccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
191 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
25276207 |
tccaccagcacctgcgtgtaatggccaaatgtgcgtttctga |
25276248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 14782999 - 14782943
Alignment:
| Q |
26 |
gagtgtccaagaatctgatagtgggagtaaaagtctgggagccattcgtactccacc |
82 |
Q |
| |
|
|||||||||||||||||| | || ||||| || || ||||||||||||||||||||| |
|
|
| T |
14782999 |
gagtgtccaagaatctgacaatgtgagtagaattcagggagccattcgtactccacc |
14782943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 23646201 - 23646030
Alignment:
| Q |
23 |
actgagtgtccaagaatctgatagtgggagtaaaagtctgggagccattcgtactccaccgcaacgggaaagcgaaaccttccctttcaacatcggtctc |
122 |
Q |
| |
|
||||||||||||||||| ||| | | ||| | || || |||||||| |||||||||||| ||| |||||||||| |||||||| || || | |||| |
|
|
| T |
23646201 |
actgagtgtccaagaatttgacaatatgagcagaattcagggagccactcgtactccacctcaataggaaagcgaacccttccctctccaccatgatctc |
23646102 |
T |
|
| Q |
123 |
ataaaaaata--cgacgaga-aaatctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
191 |
Q |
| |
|
||||||| | |||||||| || ||||| ||||| ||||||| || |||| ||||||||||||| ||||| |
|
|
| T |
23646101 |
ttaaaaaaaaaccgacgagagaagtctatatccactagcacccacgcataattgccaaaggtgcgtatctga |
23646030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 26798038 - 26798082
Alignment:
| Q |
140 |
aaaatctatgtccaccagcacccgcgtgtaatggccaaaggtgcg |
184 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
26798038 |
aaaatctacgtccaccagcacccgcgcataatggccaaatgtgcg |
26798082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University