View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5271_low_1 (Length: 752)
Name: NF5271_low_1
Description: NF5271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5271_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 353 - 741
Target Start/End: Complemental strand, 41744501 - 41744114
Alignment:
| Q |
353 |
attagcttctaattcaatcacattatattagctaacaaggtaagatattacttatcaatcttgggcatattctttttgtttgtagtgtgttaaatgatta |
452 |
Q |
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| T |
41744501 |
attagcttctaattcaatcacattatattagctaacaaggtaagatattacttatcaatcttgggcatattctttttgtttgtagtgtgtcaaatgatta |
41744402 |
T |
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| Q |
453 |
aactatcaagatgtttccggtgcagtttagatcgattttcaaaagaaaaacaaagtcatatgataactaaaatcgatatgactacatcattttgattcat |
552 |
Q |
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| T |
41744401 |
aactatcaagatgtttccggtgcagtttagatcgattttcagaagaaaaacaaagtcatatgataactaaaatcgatatgactacatcattttgatccat |
41744302 |
T |
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| Q |
553 |
atttaataacattactatctcatttaaatccatattatgtgactatgcacaagaagtaaacatgaattgataagccataagaatagtnnnnnnnnngatt |
652 |
Q |
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| T |
41744301 |
atttaataacatgactatctcatttaaatccatattatgtgactatgcacaagaagtaaacatgaattgataagccataagaatagt-aaaaaaaagatt |
41744203 |
T |
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| Q |
653 |
atattataaagtattaaacctattgatgttaaggctaggctattggatgcaaggttagaattttggttgtccttttaaacctattgatg |
741 |
Q |
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| T |
41744202 |
atattataaagtattaaacctattgatgttaaggctaggctattggatgcaaggttagaattttggttgtccttttaaacctattgatg |
41744114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 41747095 - 41746759
Alignment:
| Q |
17 |
caatcttctctccgcaaatttgaagatatataaaaacctttaattcttaccaaatattgtattgttttagtaaaacctgaaatttcagtgtgcgcaaact |
116 |
Q |
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| T |
41747095 |
caatcttctctccgcaaaattgaagata----aaaacctctaattcttaccgaatattgtattgttttagtaaaacctgaaatttcagtgtgcgcaaact |
41747000 |
T |
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| Q |
117 |
acccaataaagaataacgttagaaacacactctttaccacggtctttcttattattagttacaattcataggagtcccaccaaatttatatgagatttat |
216 |
Q |
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| T |
41746999 |
acccaataaagaataacgttagaaacacactctttaccacggtcttttttattattagttacaattcataagagtcccaccaaatttatatgagatttag |
41746900 |
T |
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| Q |
217 |
atgaattttaactaataaaagattgagttataaaatatgtgttgaaccatgttgttaacacttcactcgaataaaatactgttataaagtaaataaatta |
316 |
Q |
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| T |
41746899 |
atgaattttaactaataaaagattgagttataaaatatgtgttgaaccgtgttgttaacacttcactcgaataaaatactgttataaagtaaataaatta |
41746800 |
T |
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| Q |
317 |
atcagttgatttgatattttgacatccttcgtcttgattag |
357 |
Q |
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| T |
41746799 |
atcagttgatttgatattttgacatccttcgtcttgattag |
41746759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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