View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5271_low_3 (Length: 243)
Name: NF5271_low_3
Description: NF5271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5271_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 41743943 - 41744111
Alignment:
| Q |
75 |
gcctctataaaagatacgaaatacttgttatgaccgagagtcatcccttacacatccataaacattccagttaaaaattaataacatttgacgacagagg |
174 |
Q |
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| T |
41743943 |
gcctctataaaagacacgaaatacttattatgaccgagattcatcccttgcacatccataaacattccagttaaaagttaataatatttgacgacagagg |
41744042 |
T |
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| Q |
175 |
acaacatgaaattaatcatatctccttttgatttttcttccacaaacaaacaacttcaatattatgacc |
243 |
Q |
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| T |
41744043 |
acaacatgaaattaatcatatctccttttgatttttcttccacaaacaaacaacttcaatattatgacc |
41744111 |
T |
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