View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5271_low_4 (Length: 213)

Name: NF5271_low_4
Description: NF5271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5271_low_4
NF5271_low_4
[»] chr3 (2 HSPs)
chr3 (1-133)||(27906707-27906839)
chr3 (127-200)||(27907056-27907129)
[»] chr5 (6 HSPs)
chr5 (1-133)||(42799842-42799975)
chr5 (2-133)||(25514363-25514500)
chr5 (2-85)||(42803017-42803100)
chr5 (127-197)||(42803323-42803393)
chr5 (129-190)||(42800197-42800258)
chr5 (2-90)||(25520875-25520965)
[»] chr1 (1 HSPs)
chr1 (1-133)||(7387725-7387853)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 27906707 - 27906839
Alignment:
Q  1 ataacagaacttatcacaatgattggtaaaaaacatttgaataccacttatcataccatatgacagaaaacacatttcaaagtactagtatattagccac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||    
T  27906707 ataacagaacttatcacaatgattggtaaaatacatttgaataccacttatcataccacaggacagaaaccacatttcaaagtgctagtatattagccac 27906806  T
Q  101 aagcacatgctgcagaaatgagttggaaatgta 133  Q
    |||||||||||||||||||||||||||||||||    
T  27906807 aagcacatgctgcagaaatgagttggaaatgta 27906839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 27907056 - 27907129
Alignment:
Q  127 aaatgtattggagaaacatgattgtttcaactttagtttcactaatgttataaggaaataaatagtttcaaatg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27907056 aaatgcattggagaaacatgattgtttcaactttagtttcactaatgctataaggaaataaatagtttcaaatg 27907129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 42799842 - 42799975
Alignment:
Q  1 ataacagaacttatcacaatgattggtaaaaaacatttgaataccacttatcataccatatgacagaaaacacatttcaaagtactagt-atattagcca 99  Q
    ||||||||||||||||   ||||| | |||| ||||||||||||| ||||||| |||||| |||||||| ||||||||||||| ||||| ||||||||||    
T  42799842 ataacagaacttatcatggtgatttggaaaatacatttgaataccgcttatcacaccataggacagaaaccacatttcaaagtgctagtaatattagcca 42799941  T
Q  100 caagcacatgctgcagaaatgagttggaaatgta 133  Q
    |||| |||||||||| ||||||||||||||||||    
T  42799942 caagtacatgctgcacaaatgagttggaaatgta 42799975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 25514500 - 25514363
Alignment:
Q  2 taacagaacttatcacaatgattggtaaaaaacatttgaatacc--acttatcataccatatgacagaaaacacatttcaaagtactagta----tatta 95  Q
    |||||||  |||||||||||||||| |||| ||||||||||||   | |||||| |||||| |||||||| ||||||||||||| ||||||    |||||    
T  25514500 taacagagattatcacaatgattgggaaaatacatttgaatacagaatttatcacaccatacgacagaaaccacatttcaaagtgctagtaatattatta 25514401  T
Q  96 gccacaagcacatgctgcagaaatgagttggaaatgta 133  Q
    |||||||| |||||||||||||||||||||||||||||    
T  25514400 gccacaagtacatgctgcagaaatgagttggaaatgta 25514363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 42803017 - 42803100
Alignment:
Q  2 taacagaacttatcacaatgattggtaaaaaacatttgaataccacttatcataccatatgacagaaaacacatttcaaagtac 85  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||||||| |||||| |||||||| | |||||||||||||    
T  42803017 taacagaacttatcataatgattgggaaaatacatttgaataccacttatcacaccataggacagaaaccgcatttcaaagtac 42803100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 42803323 - 42803393
Alignment:
Q  127 aaatgtattggagaaacatgattgtttcaactttagtttcactaatgttataaggaaataaatagtttcaa 197  Q
    |||||||||||||||||||||||||| |||| |||||||||| |||| |||||| ||||||||||||||||    
T  42803323 aaatgtattggagaaacatgattgttgcaaccttagtttcacaaatggtataagaaaataaatagtttcaa 42803393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 42800197 - 42800258
Alignment:
Q  129 atgtattggagaaacatgattgtttcaactttagtttcactaatgttataaggaaataaata 190  Q
    ||||||||||||||||||||||||||| ||||||||| || |||| ||||||||||||||||    
T  42800197 atgtattggagaaacatgattgtttcagctttagttttacaaatggtataaggaaataaata 42800258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 25520875 - 25520965
Alignment:
Q  2 taacagaacttatcacaatgattggtaaaaaacatttgaatacc--acttatcataccatatgacagaaaacacatttcaaagtactagta 90  Q
    |||||||  |||||||||||||||| |||| ||||||||||||   |||||||| |||||| |||||||| ||||||||||||| ||||||    
T  25520875 taacagagattatcacaatgattgggaaaatacatttgaatacataacttatcacaccatacgacagaaatcacatttcaaagtgctagta 25520965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7387853 - 7387725
Alignment:
Q  1 ataacagaacttatcacaatgattggtaaaaaacatttgaataccacttatcataccatatgacagaaaacacatttcaaagtactagta----tattag 96  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||        ||||| ||||||||||||| ||||||    ||||||    
T  7387853 ataacagaacttatcacaatgactggtaaaatacatttgaataccacatatcatac--------agaaaccacatttcaaagtgctagtactattattag 7387762  T
Q  97 ccacaagcacatgctgcagaaatgagttggaaatgta 133  Q
    ||||||| |||||||||||||||||||||||||||||    
T  7387761 ccacaagtacatgctgcagaaatgagttggaaatgta 7387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University