View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272-Insertion-1 (Length: 680)
Name: NF5272-Insertion-1
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 8 - 680
Target Start/End: Complemental strand, 45595958 - 45595286
Alignment:
| Q |
8 |
caaggaactacggattatcaggtaatgatgcttcaaaattctgtcaaattttcagtttaatttttcttcctgatgtttgaaatgactaacatgaaccaaa |
107 |
Q |
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| T |
45595958 |
caaggaactacggattatcaggtaatgatgcttcaaaattctgtcaaattttcagtttaatttttcttcctgatgtttgaaatgactaacatgaaccaaa |
45595859 |
T |
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| Q |
108 |
cttacagagagaatactacttattggaaaagaaagcacatcaatccaaaagaagagagggccaaagggtattgtcccttaactccaaaggaagttggaat |
207 |
Q |
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| T |
45595858 |
cttacagagagaatactacttattggaaaagaaagcacatcgatccaaaagaagagagggccaaagggtattgtcccttaactccaaaggaagttggaat |
45595759 |
T |
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| Q |
208 |
tttccttagtgctcttggataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgc |
307 |
Q |
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| T |
45595758 |
tttccttagtgctcttggataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgc |
45595659 |
T |
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| Q |
308 |
tatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactggtttcttattt |
407 |
Q |
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| T |
45595658 |
tatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactggtttcttattt |
45595559 |
T |
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| Q |
408 |
aatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgt |
507 |
Q |
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| T |
45595558 |
aatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgt |
45595459 |
T |
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| Q |
508 |
atctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgggagaggaagaaccatttct |
607 |
Q |
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| T |
45595458 |
atctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgggagaggaagaaccatttct |
45595359 |
T |
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| Q |
608 |
ccagataggtgagcctctctttctctcctaagcagatgaattaattttgtaattcattatccctaatgtttgc |
680 |
Q |
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| T |
45595358 |
ccagataggtgagcctctctttctctcctaagcagatgaattaattttgtaattcattatccctaatgtttgc |
45595286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 9e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 27151508 - 27151335
Alignment:
| Q |
157 |
agaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgct |
256 |
Q |
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| T |
27151508 |
agaacagaggtccaaagggttttgccccttaacaccaaaggaagttggaatttttcttactgctcttggatatccatcaaagacgccgatatatattgct |
27151409 |
T |
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| Q |
257 |
gcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggt |
330 |
Q |
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| T |
27151408 |
gctggagagatttatgggggtgagtcccatatggctgaactgcgatcccgttatccattgttaatgagcaaggt |
27151335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 422 - 588
Target Start/End: Complemental strand, 27149117 - 27148951
Alignment:
| Q |
422 |
taatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtg |
521 |
Q |
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| T |
27149117 |
taatttcaggaaacgttggcatccattgaggagcttgaacccttttttaatcatgcttctcaaatggctgctcttgactatattgtatctatcgagagtg |
27149018 |
T |
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| Q |
522 |
atgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgg |
588 |
Q |
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| T |
27149017 |
atgtatttataccctcttattctggaaacatggcaagggctgttgaaggtcatcgccgttttcttgg |
27148951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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