View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272-Insertion-2 (Length: 657)
Name: NF5272-Insertion-2
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 8 - 656
Target Start/End: Complemental strand, 53592602 - 53591963
Alignment:
| Q |
8 |
gacaagaagaaagatgtttgtttgatattatcttttagaaggaagcatataggaaacacgcgatacaaccttacttgcattgctgttctcttcaagtagt |
107 |
Q |
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||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53592602 |
gacaataagaaagatgtttgtttgattttatcttt--gaaggaagcatataggaaacacgcgatacaaccttacttgcattgttgttctcttcaagtagt |
53592505 |
T |
|
| Q |
108 |
tgggtttgggacagataggtgaaatcgctatgttctctctcctgctaccctagccgccgccaacaacctccataaccactcacctctcctcctgcaatcc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53592504 |
tgggtttgggacagataggtgaaatcgctatgttctctctcctgctaccctagccgccgccaacaacctccataaccactcacctctcctcctgcaatcc |
53592405 |
T |
|
| Q |
208 |
aaacacgttttccatcatgtagtctcacgcaggtggtgaacgcgctcctcgccgcttcaccaccctcgctccttgttccgttgggtagctggggccgtct |
307 |
Q |
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|||||| ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| |
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| T |
53592404 |
aaacacattttccatcatgtagcctgacgcaagtggtgaacgcgctcctcgccgcttcaccaccctcgctccttgttctgttgggtagccggcgccgtct |
53592305 |
T |
|
| Q |
308 |
gtgctctcgccggtgatgctttttggatctgcgacaacccctcgatctgttctcaaatatgtgggtcgttgtttctcttcatcggagctactgagtctcc |
407 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
53592304 |
gtgctctcgtcggtgatgctttttggatctgcgacaacccctcgatctgttctcaaatatgtgggtcgttgtttctcctaatcggagctactgagtctcc |
53592205 |
T |
|
| Q |
408 |
agtgacctctgcaccgccgtcggcttgggtcttgtttgtgatgactttgtgttgcagcggtttcgctggcagatgtcttctcttttggttatccgacggt |
507 |
Q |
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| T |
53592204 |
ggtgacctctgcgccgccgtcgtcttgggtcctgtttgtgatgactttgtgttgctgcggtttcgctggcagatgtcttctcttttggttatccgacggt |
53592105 |
T |
|
| Q |
508 |
ttgttgtctttattttcgtctgtttggnnnnnnnnnnnnnnnnnngttccgggaagatgaagattgatggtggttttgttccgactctctagtttggttg |
607 |
Q |
| |
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||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
53592104 |
ttgttgtctttattttcgtctctttgg-------tttttttttttgttccgagaagatgaagattggcggtggttttgttccgactctctggtttggttg |
53592012 |
T |
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| Q |
608 |
aaattttgaatctggtttgtccggatttaagatttggttatatggttct |
656 |
Q |
| |
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|| |||||||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
53592011 |
aatttttgaatatggtttgttcggatttaagatttggttatctggttct |
53591963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 156 - 342
Target Start/End: Original strand, 23779380 - 23779566
Alignment:
| Q |
156 |
cctagccgccgccaacaacctccataaccactcacctctcctcctgcaatccaaacacgttttccatcatgtagtctcacgcaggtggtgaacgcgctcc |
255 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
23779380 |
cctagccgccaccgacaacctccataaccactcacctctcctcctccaatccaaacacgtttttcatcatgtagcctcacgcaggtggtgaacgcgctcc |
23779479 |
T |
|
| Q |
256 |
tcgccgcttcaccaccctcgctccttgttccgttgggtagctggggccgtctgtgctctcgccggtgatgctttttggatctgcgac |
342 |
Q |
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| T |
23779480 |
tcgccgcttcaccaccctcgctccttgttccgttgggtagccggcgccgtatgtgctctcgtcggtgatgctttttggatctgcgac |
23779566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 328 - 646
Target Start/End: Original strand, 23779594 - 23779888
Alignment:
| Q |
328 |
ttttggatctgcgacaacccctcgatctgttctcaaatatgtgggtcgttgtttctcttcatcggagctactgagtctccagtgacctctgcaccgccgt |
427 |
Q |
| |
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| T |
23779594 |
ttttggatctgcgacaacccctcgatctgttctcaaattcgtaggacgttgt---------------ctactgagtttccggtgacctctgcgccgccgt |
23779678 |
T |
|
| Q |
428 |
cggcttgggtcttgtttgtgatgactttgtgttgcagcggtttcgctggcagatgtcttctcttttggttatccgacggtttgttgtctttattttcgtc |
527 |
Q |
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|| |||||||| ||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
23779679 |
cgacttgggtcatgtttgtc-------tgtgttgctgcggtttcgctggcagatatcttctcttttggttatccgacagtttgtagtctttattttcgt- |
23779770 |
T |
|
| Q |
528 |
tgtttggnnnnnnnnnnnnnnnnnngttccgggaagatgaagattgatggtggttttgttccgactctctagtttggttgaaattttgaatctggtttgt |
627 |
Q |
| |
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| |||| ||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||| |||||| |||| ||||| |
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| T |
23779771 |
tttttg--tcatttggttttattttgttccgggaagatgaagattggtggtggttccgttccgaacctctggtttggttgaatttttgagtctgatttgt |
23779868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 557 - 648
Target Start/End: Complemental strand, 4858627 - 4858536
Alignment:
| Q |
557 |
cgggaagatgaagattgatggtggttttgttccgactctctagtttggttgaaattttgaatctggtttgtccggatttaagatttggttat |
648 |
Q |
| |
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||||||||||||||||| ||||||| || ||| | || || |||| ||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
4858627 |
cgggaagatgaagattggtggtggtcttattctggctatccggtttagttgaaattttgaatttggtttgtctggatttaagatttggttat |
4858536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 558 - 646
Target Start/End: Original strand, 1953927 - 1954015
Alignment:
| Q |
558 |
gggaagatgaagattgatggtggttttgttccgactctctagtttggttgaaattttgaatctggtttgtccggatttaagatttggtt |
646 |
Q |
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||||||||||||||| ||||||| |||||| | || ||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1953927 |
gggaagatgaagattagtggtggtcttgttcaggctatctggtttagtttaaattttgaatctggtttgtccggatttaagatttggtt |
1954015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 512
Target Start/End: Original strand, 1953853 - 1953898
Alignment:
| Q |
467 |
gtttcgctggcagatgtcttctcttttggttatccgacggtttgtt |
512 |
Q |
| |
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||||||||||| | ||||||||||||| ||||||| |||||||||| |
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| T |
1953853 |
gtttcgctggcgggtgtcttctctttttgttatccaacggtttgtt |
1953898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 646
Target Start/End: Complemental strand, 27309190 - 27309106
Alignment:
| Q |
560 |
gaagatgaagattgatggtggttttgttccgactctctagtttggttgaaattttgaatctggtttgtccggatttaagatttggtt |
646 |
Q |
| |
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||||||||||||| |||||||||||| | |||||| |||| ||||||||||||||| |||||||| ||||| || |||||||| |
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| T |
27309190 |
gaagatgaagatttgtggtggttttgtcctgactctg--gtttagttgaaattttgaatttggtttgttcggatatacaatttggtt |
27309106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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