View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5272-Insertion-3 (Length: 451)

Name: NF5272-Insertion-3
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5272-Insertion-3
NF5272-Insertion-3
[»] chr2 (1 HSPs)
chr2 (8-451)||(35505421-35505864)


Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Original strand, 35505421 - 35505864
Alignment:
Q  8 atatataaatcacacacttgtgtatctctttcttcctattattctctactcttaccttaccttatacctttcatattcatattgttaaatcaaattcaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35505421 atatataaatcacacacttgtgtatctctttcttcctattattctctactcttaccttaccttatacctttcatattcatattgttaaatcaaattcaaa 35505520  T
Q  108 accctatatttcttttttcttaagatgttgtctaaaatggacatggaaggaataataagaagtgaagaacatggtaatgatgccgggcatctcatcaaag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35505521 accctatatttcttttttcttaagatgttgtctaaaatggacatggaaggaataataggaagtgaagaacatggtaatgatgccgggcatctcatcaaag 35505620  T
Q  208 gaaagcgaacgaaacggttaaggcagctgtctcctgtcaccgtggcaactgctacgatgacatcaagttgctcaagtgccactggaggtggtggatcgtt 307  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35505621 gaaagcgaacgaaacggttaaggcaattgtctcctgtcaccgtggcaactgctacgatgacatcaagctgctcaagtgccactggaggtggtggatcgtt 35505720  T
Q  308 ttcatccaccaccttcgatgacactgagcatgaagaggaagcagacatggctaattgtttgattcttctggctcaaggaagaaccggaagagatgaggag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35505721 ttcatccaccaccttcgatgacactgagcatgaagaggaagcagacatggctaattgtttgattcttctggctcaaggaagaaccggaagagatgaggag 35505820  T
Q  408 aatcaaaatcgtcgtcctcagaaccaccacctccccaacaacag 451  Q
    |||||||||| ||||||||||||||||||||||| |||||||||    
T  35505821 aatcaaaatcttcgtcctcagaaccaccacctccacaacaacag 35505864  T

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