View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272_high_10 (Length: 338)
Name: NF5272_high_10
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 43055283 - 43054967
Alignment:
| Q |
17 |
catatttaatgtccgacaatatttagaatatgattatatttagtcgagggaatttatgcaagaaaaaagtaatgaagtgttgactgcaaacgtttaaagt |
116 |
Q |
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| T |
43055283 |
catatttaatgtcggacaatatctcgaatatgattacatttagtcgagggaatttatgcaagaaaaaagtaatgaagtgttgactgcaaacgtttaaagt |
43055184 |
T |
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| Q |
117 |
tgtatctactggagaatattcgaaagaaaatgtttgattgaccaagtagagcacggcaaaatgtgaattgtgtttaagaaacttgtgcttcaagcaaaaa |
216 |
Q |
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| T |
43055183 |
tgtatctactggagaatattcgagagaaaatgtttgattgaccaagtagagcacggcaaaatgtgaattgtgtttaagaaacttgtgcttcaagcaaaaa |
43055084 |
T |
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| Q |
217 |
cttgttaatgactgacatagccgtgaagggttagactgtgtgactaagttaataattccacaagttttcccaaactttctcccaacatttcaattgcatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43055083 |
cttgttaatgactgacatagccgtgaagggttagactgtgtgactaagttaataattccacaagttttcccaaactttctcccaacatttcaattgcatt |
43054984 |
T |
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| Q |
317 |
ctaagattccctttgct |
333 |
Q |
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||||||||||||||||| |
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| T |
43054983 |
ctaagattccctttgct |
43054967 |
T |
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