View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272_high_12 (Length: 275)
Name: NF5272_high_12
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 49109611 - 49109378
Alignment:
| Q |
20 |
catacagttcatcattgactaatgagctaagtcatagttatttagtttctagctataattcaaatttgaggataaaagtaccaactaaactgtgaactcg |
119 |
Q |
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| T |
49109611 |
catacagttcatcattgactaatgagctaagtcatagttatttagtttctagctataattcaaatttgaggataaaagtaccaactaaactgtgaactcg |
49109512 |
T |
|
| Q |
120 |
atcattaaaactgataagttgtgaaaatgatcaaagtttagatcctgggaatggtaaaaacttattaactactactagtatttaagaagtttctggatta |
219 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49109511 |
atcattaaaactgataagttgtgacaatgatcaaagtttagatcctgggaatggtaaaaacttattaactactactagtatttaagaagtttctggatta |
49109412 |
T |
|
| Q |
220 |
gaaattaaaatttcaaaatgttacattaaggact |
253 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
49109411 |
gaaattaaaatttcaaaatgttatattaaggact |
49109378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 49534554 - 49534319
Alignment:
| Q |
20 |
catacagttcatcattgact-aatgagctaagtcatagttatttagtttctagctataattcaaatttgaggataaaagtaccaactaaactgtgaactc |
118 |
Q |
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|||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49534554 |
cataaagttcatcattaacttaatgagctaagtcatagttatttagtttccagctataattcaaatttgaggataaaagtaccaactaaactgtgaagtc |
49534455 |
T |
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| Q |
119 |
gatcattaaaactgataagttgtgaaaatga-tcaaagtttagatcctgggaatggtaaaaacttattaactactactagtatttaagaagtttctggat |
217 |
Q |
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| T |
49534454 |
gagcattaaaactgataagttgggagaatgacttaaagtttcgatcctgagaatggtaaaaacttgttagcaactactagtatttaagaagattctggat |
49534355 |
T |
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| Q |
218 |
tagaaattaaaatttcaaaatgttacattaaggact |
253 |
Q |
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||||| |||||||||||||| ||||||||||||||| |
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| T |
49534354 |
tagaagttaaaatttcaaaaagttacattaaggact |
49534319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 49107891 - 49107772
Alignment:
| Q |
20 |
catacagttcatcattgactaatgagctaagtcatagttatttagtttctagctata----attcaaatttgaggataaaagtaccaactaaactgtgaa |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||| |||||||| |
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| T |
49107891 |
cataaagttcatcattgactaatgagctaagtcatagttatt-agtttgtagctatatataagtcaaatttgaggataaaagtaccaactagactgtgaa |
49107793 |
T |
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| Q |
116 |
ctcgatcattaaaactgataa |
136 |
Q |
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|| | ||||||||||||||| |
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| T |
49107792 |
ctggggcattaaaactgataa |
49107772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 38176320 - 38176237
Alignment:
| Q |
170 |
atggtaaaaacttattaactactactagtatttaagaagtttctggattagaaattaaaatttcaaaatgttacattaaggact |
253 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||| |
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| T |
38176320 |
atggtaaaaacttattaacaactactggtatttaagaagtttctggatcagaagataaaattccaaaaagttacattaaggact |
38176237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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