View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272_high_13 (Length: 267)
Name: NF5272_high_13
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 28674204 - 28674443
Alignment:
| Q |
13 |
gagagggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctt |
112 |
Q |
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| T |
28674204 |
gagagggaggcacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtattgtcataaagctaccgtccgtgtgctt |
28674303 |
T |
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| Q |
113 |
tgtagtgcctatggttaactctggctcagggcatggtgggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaaagtga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
28674304 |
tgtagtgcctatggttaactctggctcagggcatggtgggtaatagtgacacaagagaaaaaacttttcagcaccacccatttctttaaggtgaaagcga |
28674403 |
T |
|
| Q |
213 |
ttaagacctggagcttctgataataactcaaacaaagaat |
252 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
28674404 |
ttaagacctagagcttctgataataactcaaacaaagaat |
28674443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 28648745 - 28648979
Alignment:
| Q |
17 |
gggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctttgta |
116 |
Q |
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| T |
28648745 |
gggagctacatcaatccattgattgttatgaagaacttctaagccaccaatatgatcttgcaaaagtattgtaataaagctaccatctgagtgcttgaca |
28648844 |
T |
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| Q |
117 |
gtgcctatggttaactctggctcagggcatggtgggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaaagtgattaa |
216 |
Q |
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| T |
28648845 |
gtgccaatggttaactctggctcagggcatggtggacaataatgacatagatggaaaaaactttcagcagcacccatttctttaaggtgaaagcgattaa |
28648944 |
T |
|
| Q |
217 |
gacctggagcttctgataataactcaaacaaagaa |
251 |
Q |
| |
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| || ||| ||||| ||||||||| |||||||| |
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| T |
28648945 |
ggccaagagactctgacaataactcatacaaagaa |
28648979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 28639445 - 28639672
Alignment:
| Q |
24 |
acatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctttgtagtgccta |
123 |
Q |
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| T |
28639445 |
acatcaatccattgattgtcatgaagaacttctaagccaccaatatgatcttgcaaaactattgtaataaagctagcatctgagtgcttgacagtgccaa |
28639544 |
T |
|
| Q |
124 |
tggttaactctggctcagggcatggtgggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaaagtgattaagacctgg |
223 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| | | | || || |||||||| ||||||||||||||||||||||| ||||||| || | |
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| T |
28639545 |
tggttaactctggctcagggcatggtggataataatgacatagatggaaaaaactttcagcagcacccatttctttaaggtgaaagcgattaaggccaag |
28639644 |
T |
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| Q |
224 |
agcttctgataataactcaaacaaagaa |
251 |
Q |
| |
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| ||||| ||||||||| |||||||| |
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| T |
28639645 |
tgactctgacaataactcatacaaagaa |
28639672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 28670304 - 28670538
Alignment:
| Q |
17 |
gggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctttgta |
116 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||| |||||||||||||| |||||| |||| ||||||||| ||||||||| || | |||||| ||| |
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| T |
28670304 |
gggaggtacatcaatccactgattgtcatgaagaatttgtaagccaccaatatgatcttgcaaaagtactgtaataaagctagcatctgagtgcttggta |
28670403 |
T |
|
| Q |
117 |
gtgcctatggttaactctggctcagggcatggtgggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaaagtgattaa |
216 |
Q |
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||||| || |||||||| ||||||||||||| ||| ||||| ||||| | | | | || |||||||| | |||||||||||||||||| || | |||| |
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| T |
28670404 |
gtgccaatagttaactccggctcagggcatgctggataataatgacatagatgtacaaaactttcagcagcgcccatttctttaaggtgagagcggttaa |
28670503 |
T |
|
| Q |
217 |
gacctggagcttctgataataactcaaacaaagaa |
251 |
Q |
| |
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|||| |||| ||||| |||||||| |||||||| |
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| T |
28670504 |
gaccgagagcctctgacaataactcgtacaaagaa |
28670538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 28690563 - 28690788
Alignment:
| Q |
18 |
ggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctttgtag |
117 |
Q |
| |
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|||| |||||||| |||||||| ||||||||||||||||||||| |||| |||||| |||| ||||| || || ||| | |||| ||||| || ||| |
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| T |
28690563 |
ggagttacatcaatccattgatcgtcatgaagaacttgtaagccgccaatatgatcttgcaaaagtatagttatgaagtcattgtctgtgtgattggtat |
28690662 |
T |
|
| Q |
118 |
tgcctatggttaactctggctcagggcatggtgggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaaagtgattaag |
217 |
Q |
| |
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| || || ||||| || || ||||| ||||| |||||||||||||| | || || ||| |||||||| |||||||||||||||||||| || || |
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| T |
28690663 |
ttcccatagttaattcaggttcaggacatggagggtaatagtgacatagaacaatcaacccttcagcacaccccatttctttaaggtgaaatctgtttag |
28690762 |
T |
|
| Q |
218 |
acctggagcttctgataataactcaa |
243 |
Q |
| |
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||| |||||||||| |||||||||| |
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| T |
28690763 |
ccctagagcttctgacaataactcaa |
28690788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 49464341 - 49464447
Alignment:
| Q |
45 |
tgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctttgtagtgcctatggttaactctggctcagggc |
144 |
Q |
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||||||||||| | ||||||| || || || ||||||| |||||| ||| |||| || || |||||||||||||| || |||||||| || ||||||| |
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| T |
49464341 |
tgaagaacttgaagaccaccaagttggtcttgtagaagtaatgtcatgaagttactatcagtatgctttgtagtgcccatagttaactcaggttcagggc |
49464440 |
T |
|
| Q |
145 |
atggtgg |
151 |
Q |
| |
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| T |
49464441 |
acggtgg |
49464447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 33761850 - 33761898
Alignment:
| Q |
18 |
ggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaa |
66 |
Q |
| |
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||||| ||||||||||||||||| | |||||||||||| || ||||||| |
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| T |
33761850 |
ggaggaacatcaacccattgattctgatgaagaacttgaaaaccaccaa |
33761898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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