View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272_high_19 (Length: 246)
Name: NF5272_high_19
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 34550247 - 34550053
Alignment:
| Q |
19 |
aaatggtcactcatggaacacattcaggccataagcttgtttgatggttacttaacatgcaaggcaggatattttaacatataatcaccgatgtgtgttt |
118 |
Q |
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| T |
34550247 |
aaatggtcactcatggaacacattcaggccataagcttgtttgatggttacttaacatgcaaggcaggatatcttaacatatgatcaccgatgtgtgttt |
34550148 |
T |
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| Q |
119 |
gtattaattaaataaactcctgcttagccagccgttattatgctatataaatcgtgtatcaataattaatgaagcatatctatatcatgtattaa |
213 |
Q |
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| T |
34550147 |
gtattaattaaataaactcctgcttagccagccgttattatgttatatgaatcgtgtatcaataattaatgaagcatatttatatcatgtattaa |
34550053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 34546702 - 34546624
Alignment:
| Q |
164 |
tataaatcgtgtatcaataattaatgaagcatatctatatcatgta-ttaaattaatgaacatgtgatgaattattgta |
241 |
Q |
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|||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||| |||| | |||| |||||||| |
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| T |
34546702 |
tataaatcttgtatcaataattaatgaagcatatgaataacatgtatttaaattaattaacaagccatgagttattgta |
34546624 |
T |
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