View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272_high_3 (Length: 524)
Name: NF5272_high_3
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 47 - 517
Target Start/End: Complemental strand, 22408438 - 22407969
Alignment:
| Q |
47 |
agaaataatcactcaatgtttttgaaatccctcttatgattaaattgcaacaagtggtaaataatagaagtaaaaattgtatgcggtcaagaataatcct |
146 |
Q |
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| T |
22408438 |
agaaataatcacccagtgtttttgaaatccctcttatgattaaattgcaacaagtggtaaataatagaagtaaaaattgtacgcggtcaagaataatcct |
22408339 |
T |
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| Q |
147 |
tacattctcgttactgttgtaaatggtgcaagtgctctaaaaccataaacatcttgggatgatgatcataaagagttctatatgacaaaaaggccaaaac |
246 |
Q |
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| T |
22408338 |
tacattctcgttactgttgtaaatggtgcaagtgctctaaaaccagaaacatcttgggatgatgatcataaagagttctatatgacaaaaaggccaaaac |
22408239 |
T |
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| Q |
247 |
cattcttgcatccgttctagggatgtatgaattctttagaatctcaaattatcaaactgcgaaagaaatttgagatactctagaaattacccatgaaaga |
346 |
Q |
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| T |
22408238 |
cattattgcatccgttctagggatgtatgaattctttagaatctcaaataatcaaactgccaaagaaatttgagatactctagaaattacccatgaaaga |
22408139 |
T |
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| Q |
347 |
acaaaagaaggaaagcgatatagacttgccaccccttctaaaaaatatgaaatatttagaatgctatcgggagaaagaattctaaatatgcaaaagagat |
446 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |
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| T |
22408138 |
acaaaagaagtaaagcgatatagacttgccaccccttctaaaaaatatgaaatatttagaatgctaccgggagaatgaattctagatatgcaaaagagat |
22408039 |
T |
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| Q |
447 |
tcactcatttaaccaatcatctcaccgccttagnnnnnnnctcttactaacaataatttgaatttgatgat |
517 |
Q |
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| T |
22408038 |
tcactcatttaaccaatcatctcaccgccttag-aaaaaactcttactaataataatttgaatttgatgat |
22407969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 14771440 - 14771523
Alignment:
| Q |
249 |
ttcttgcatccgttctagggatgtatgaattctttagaatctcaaattatcaaactgcgaaagaaatttgagatactctagaaa |
332 |
Q |
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| T |
14771440 |
ttcttgcatccggtgtagggatggatgaagttttaagaatcttaaattgtaaaactgcaaaagaaatttgtgatactctagaaa |
14771523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 18071875 - 18071994
Alignment:
| Q |
143 |
tccttacattctcgttactgttgtaaatggtgcaagtgctctaaaaccataaacatcttg---ggatgatgatcataaaga-gttctatatgacaaaaag |
238 |
Q |
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| T |
18071875 |
tcctcacattcctgttaccgttgtaaatggtacaagtacactaaaaccaaaaacatcgtgagatgatgatgatcataaaaatgtcctatatgacaaaaag |
18071974 |
T |
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| Q |
239 |
gccaaaaccattcttgcatc |
258 |
Q |
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| T |
18071975 |
gccaaaagtattcttgcatc |
18071994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 475
Target Start/End: Complemental strand, 31320350 - 31320307
Alignment:
| Q |
432 |
atatgcaaaagagattcactcatttaaccaatcatctcaccgcc |
475 |
Q |
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| T |
31320350 |
atatgcaaaaaagattcactcatttaaccagtcatttcaccgcc |
31320307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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