View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272_high_6 (Length: 374)
Name: NF5272_high_6
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 31346432 - 31346785
Alignment:
| Q |
1 |
aagcatttctggacccctagataataaaagaaaatttgttaagtgctcaagttagtatgaagaataatcaataagaaatttaatatgtatgcaatttcac |
100 |
Q |
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| T |
31346432 |
aagcatttctggacccctagaatgtaaaagaaaatttgttaagtgctcaagtcagtatgaagaataatcaataagaaatttaatatgtatgcaatttcac |
31346531 |
T |
|
| Q |
101 |
ttttattagaatatagatagatgagattggatgtatatcacattcttatgagaatttattggttgatcaagttatgttgaggacagaacactgctcaata |
200 |
Q |
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| T |
31346532 |
ttttattagaatatagatagataagattggatgtatatcacattcttatgagaatttattggttgatcaagttatgttgaggacagaaaactgctcaata |
31346631 |
T |
|
| Q |
201 |
ttaagacatatttnnnnnnngtagataatggaaaccttaatctcttagattctcaattttagtcccactaatcaatgatagttctgcatcatatttggga |
300 |
Q |
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| T |
31346632 |
ttaatacatatttcaaaaaagtagataatggaaaccttaatctattcgattctcaattttagttccagtaatcaatgattgttctgcatcatatttggga |
31346731 |
T |
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| Q |
301 |
tcttcgaaatacatgattatgaatcttatattcttgtttgaaagtagacttggt |
354 |
Q |
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| T |
31346732 |
tcttctaaatacatgattatgaatcttatattcttgtttgaaagtagacttggt |
31346785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 31399108 - 31399151
Alignment:
| Q |
311 |
acatgattatgaatcttatattcttgtttgaaagtagacttggt |
354 |
Q |
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| T |
31399108 |
acatgattatgaatcttatattcttgtttaaaagtagacttggt |
31399151 |
T |
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