View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272_low_10 (Length: 358)
Name: NF5272_low_10
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 28959224 - 28959397
Alignment:
| Q |
18 |
tcaataacatctcatgaagaaaacacgacatgattggcacatctctattggactggacatgaagaaacccaaccatgaatgttgttgttttaagattaaa |
117 |
Q |
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| T |
28959224 |
tcaataacatctcattaagaaaacacaacatgattggcacatctctattggactggacatgaagaaacccaaccatgaatgttgttgttttaagattaaa |
28959323 |
T |
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| Q |
118 |
tgagttaaacaatcaagatttaaacttggtgaaggacaaaatactaacatatttacttatctaaaaaatatatc |
191 |
Q |
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| T |
28959324 |
tgagttaaacaatcgagatttaaacttggtgaaggacaaaatactaacatatttacttatctaaaaaatatatc |
28959397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 28959526 - 28959592
Alignment:
| Q |
283 |
gtagggccaatatatactaacattaataatgatactaaattatgtatacaatgggttgcagaataat |
349 |
Q |
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| T |
28959526 |
gtagggccaataaatactaacattaataatgatactaaattatgtatgcaatgggttgcagaataat |
28959592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 28959448 - 28959491
Alignment:
| Q |
242 |
aacaattgagcctgctccagctccacaatattcaaaaacatgta |
285 |
Q |
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| T |
28959448 |
aacaattgagcctgctccagctccacaatattcaaaaacatgta |
28959491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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