View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5272_low_12 (Length: 345)
Name: NF5272_low_12
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_low_12 |
 | |
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| [»] scaffold0236 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 43702996 - 43702654
Alignment:
| Q |
1 |
tataccttagtttatcagttggaacaacgagttctgagtctttttgttgatggtaaaattcaggagaggttttaggtggcaatggaagttttctgttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43702996 |
tataccttagtttatcagttggaacaacgagttctgagtctttttgttgatggtaaaattcaggagaggttttaggtggcaatggaagttttctgttctt |
43702897 |
T |
|
| Q |
101 |
ataggcagcaacagatacttgtgcaaaaccagtgaataagctggttttttgtttaattttcacataaagaggagaagcaagaaagcataagacagtggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
43702896 |
gtaggcagcaacagatacttgtgcaaaaccagtgaataagctggttttttgtttaattttcacataaagaggagaagcaagaaagaataagacagtggat |
43702797 |
T |
|
| Q |
201 |
ataagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
43702796 |
ataagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatatatactattccagtgagagctattatgacagctatagttg |
43702697 |
T |
|
| Q |
301 |
tgaaagcataataccaactgaagaatatttcaaaaaccctgcg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43702696 |
tgaaagcataataccaactgaagaatatttccaaaaccctgcg |
43702654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 43713820 - 43713481
Alignment:
| Q |
1 |
tataccttagtttatcagttggaacaacgagttctgagtctttttgttgatggtaaaattcaggagaggttttaggtggcaatggaagttttctgttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||||||||||| | |||||||||||||||||||| |||||||||||||||| |||||||||||| || |
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|
| T |
43713820 |
tataccttagtttatcagttggaataacaaggtctgagtctttcttgtgatggtaaaattcaggagatgttttaggtggcaatgaaagttttctgttttt |
43713721 |
T |
|
| Q |
101 |
ataggcagcaacagatacttgtgcaaaaccagtgaataagctggttttttgtttaattttcacataaagaggagaagcaagaaagcataagacagtggat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| ||||||||||||||| | |||||||||||| |
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|
| T |
43713720 |
ataggcagcaacagatacttgtgcaaaaccagtgagcaagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaagacagtggat |
43713621 |
T |
|
| Q |
201 |
ataagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagttg |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43713620 |
ataagcatgagtgctgctggaacaccaaaaccaattctccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagtta |
43713521 |
T |
|
| Q |
301 |
tgaaagcataataccaactgaagaatatttcaaaaaccct |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43713520 |
tgaaagcataataccaactgaagaatatttccaaaaccct |
43713481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 43686496 - 43686166
Alignment:
| Q |
1 |
tataccttagtttatcagttggaacaacgagttctgagtctttttgttgatggtaaaattcaggagaggttttaggtggcaatggaagttttctgttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |
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|
| T |
43686496 |
tataccttagtttatcagttggaacaacaaggactgagtcttttttgtgatggtaaaattcaggtgaggttttcggtggcaatgaaagttttctgttctt |
43686397 |
T |
|
| Q |
101 |
ataggcagcaacagatacttgtgcaaaaccagtgaataagctggttttttgtttaattttcacataaagaggagaagcaagaaagcataagacagtggat |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| ||||||||||||||| | |||||||||||| |
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|
| T |
43686396 |
aaaggcagcaacagatacttgtgcaaaaccagtgagcaagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaagacagtggat |
43686297 |
T |
|
| Q |
201 |
ataagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagttg |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
43686296 |
ataagcatgagtgctgctggaacaccaaaaccaattctccaaccaagatgatcttggatatatactattccaaatagagctgctatgacagctatagttg |
43686197 |
T |
|
| Q |
301 |
tgaaagcataataccaactgaagaatatttc |
331 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| |
|
|
| T |
43686196 |
tggaagcataataccaagtgaagaatatttc |
43686166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 43727728 - 43727383
Alignment:
| Q |
1 |
tataccttagtttatcagttggaacaacgagttc------tgagtctttttgttgatggtaaaattcaggagaggttttaggtggcaatggaagttttct |
94 |
Q |
| |
|
|||||||||||||||||||||||| ||| || || |||||| |||| ||||||||||||| ||| ||| | |||||||| ||| |||||||||| |
|
|
| T |
43727728 |
tataccttagtttatcagttggaataacaagatcaagatctgagtcctttttgtgatggtaaaattgaggtgagttcttaggtggtaattgaagttttct |
43727629 |
T |
|
| Q |
95 |
gttcttataggcagcaacagatacttgtgcaaaaccagtgaataagctggttttttgtttaattttcacataaagaggagaagcaagaaagcataagaca |
194 |
Q |
| |
|
||||||||| |||||| || ||||||||||||||||| | ||||||||| ||| | | || || |||||||||||||||||||||||| | ||| | |
|
|
| T |
43727628 |
gttcttataagcagcagtagtgacttgtgcaaaaccagtaatcaagctggttctttttgtgatcttgacataaagaggagaagcaagaaagaaacagata |
43727529 |
T |
|
| Q |
195 |
gtggatataagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatatatactattccggtgagagctattatgacagcta |
294 |
Q |
| |
|
|| |||| |||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| | |||||||||| ||||| || | |
|
|
| T |
43727528 |
gtagataaaagcatgagtgctgctggaacaccaaaaccaattttccaaccaagatgctcttggatatatacaattacagtgagagctagtatgatagaaa |
43727429 |
T |
|
| Q |
295 |
tagttgtgaaagcataataccaactgaagaatatttcaaaaaccct |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43727428 |
tagttgtgaaagcataataccaactgaagaatatttccaaaaccct |
43727383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 43734977 - 43734931
Alignment:
| Q |
216 |
gctggaacaccaaaaccaactttccaaccaagatgatcttggatata |
262 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
43734977 |
gctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
43734931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 3 - 340
Target Start/End: Original strand, 24202 - 24539
Alignment:
| Q |
3 |
taccttagtttatcagttggaacaacgagttctgagtctttttgttgatggtaaaattcaggagaggttttaggtggcaatggaagttttctgttcttat |
102 |
Q |
| |
|
||||||||||||||||||||||| || || | |||||| || | ||||||||||||| ||| || ||||||| || |||| |||||||||||| ||| |
|
|
| T |
24202 |
taccttagtttatcagttggaaccacaagatttgagtccttgttgtgatggtaaaattgaggtgaatttttaggcggtaatgtaagttttctgttgttac |
24301 |
T |
|
| Q |
103 |
aggcagcaacagatacttgtgcaaaaccagtgaataagctggttttttgtttaattttcacataaagaggagaagcaagaaagcataagacagtggatat |
202 |
Q |
| |
|
||| |||||||| |||||| ||||||| || ||| ||| ||||| ||| || ||| || |||||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
24302 |
aggaagcaacagttacttgcgcaaaactagcgaacaagttggttcttttttgaatctttacataaagaggagaagcaagaaagaataacaatgtggataa |
24401 |
T |
|
| Q |
203 |
aagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagttgtg |
302 |
Q |
| |
|
|| ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||| ||| |
|
|
| T |
24402 |
aaacatgagtgctgctggaactccaaaaccaattttccaaccaagatgatcttggatatatactattacagtgagagctattatggcagagatacttgca |
24501 |
T |
|
| Q |
303 |
aaagcataataccaactgaagaatatttcaaaaaccct |
340 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || ||||| |
|
|
| T |
24502 |
aaagcataataccagctgaaaaacatttccaagaccct |
24539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 3 - 340
Target Start/End: Complemental strand, 25273520 - 25273183
Alignment:
| Q |
3 |
taccttagtttatcagttggaacaacgagttctgagtctttttgttgatggtaaaattcaggagaggttttaggtggcaatggaagttttctgttcttat |
102 |
Q |
| |
|
|||||||||||||| |||||||| || || |||||||| || | ||||||||||||| ||| || ||||||| || ||||||||||||| ||| ||| |
|
|
| T |
25273520 |
taccttagtttatctgttggaactacaagatctgagtccttgttgtgatggtaaaattgaggtgaatttttaggcggtaatggaagttttcggttgctat |
25273421 |
T |
|
| Q |
103 |
aggcagcaacagatacttgtgcaaaaccagtgaataagctggttttttgtttaattttcacataaagaggagaagcaagaaagcataagacagtggatat |
202 |
Q |
| |
|
||| |||||| |||||| |||||| || ||| ||| ||||| ||| || ||| || |||||||||||||||||||||||| |||| | ||||| | |
|
|
| T |
25273420 |
aggaagcaacgattacttgcccaaaactagcgaacaagttggttcttttttgaatctttacataaagaggagaagcaagaaagaataacagtgtggacaa |
25273321 |
T |
|
| Q |
203 |
aagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagttgtg |
302 |
Q |
| |
|
|| ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||| ||| |
|
|
| T |
25273320 |
aaacatgagtgctgctggaactccaaaaccaattttccaaccaagatgatcttggatatatactattacagtgagagctattatggcagagatacttgca |
25273221 |
T |
|
| Q |
303 |
aaagcataataccaactgaagaatatttcaaaaaccct |
340 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || ||||| |
|
|
| T |
25273220 |
aaagcataataccagctgaaaaacatttccaagaccct |
25273183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 162 - 331
Target Start/End: Complemental strand, 2689935 - 2689766
Alignment:
| Q |
162 |
acataaagaggagaagcaagaaagcataagacagtggatataagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatat |
261 |
Q |
| |
|
|||||||| |||||||||||||| | |||| |||||| | | ||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
2689935 |
acataaagtggagaagcaagaaaaaagaagaaagtggaaaagaacataagtgctgctggaacaccaaaaccaagtttccatccaagatgatcttggatat |
2689836 |
T |
|
| Q |
262 |
atactattccggtgagagctattatgacagctatagttgtgaaagcataataccaactgaagaatatttc |
331 |
Q |
| |
|
|||||||||| |||| || |||||||||| |||| | | ||||||| |||||||||||||||||||| |
|
|
| T |
2689835 |
atactattcctgtgaatgcaattatgacagaaatagccgaggaagcatagtaccaactgaagaatatttc |
2689766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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