View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5272_low_14 (Length: 287)

Name: NF5272_low_14
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5272_low_14
NF5272_low_14
[»] chr5 (15 HSPs)
chr5 (1-275)||(31332196-31332474)
chr5 (1-275)||(31380981-31381259)
chr5 (1-224)||(31317355-31317577)
chr5 (1-223)||(31368569-31368790)
chr5 (1-121)||(31284714-31284834)
chr5 (1-128)||(31281430-31281557)
chr5 (8-128)||(31279452-31279572)
chr5 (1-113)||(31643862-31643974)
chr5 (1-112)||(31475924-31476035)
chr5 (1-112)||(40843306-40843417)
chr5 (222-275)||(31317648-31317701)
chr5 (7-112)||(31329927-31330032)
chr5 (7-112)||(31378709-31378814)
chr5 (2-79)||(31494139-31494216)
chr5 (11-79)||(31416562-31416630)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 31332196 - 31332474
Alignment:
Q  1 cttcatctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggcttt 100  Q
    |||||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31332196 cttcatctgttgttggactgctttgttatgctttaagctcttccttcaactacctctttggagaatggaatttgttgaaaatatttctctacagtgcttt 31332295  T
Q  101 cagtttcatcatctgcttggtcattttaatttatatgcaaagaaattgcaatattatagaagtctctgatttaaagc----gcggcatttttggtattga 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||     ||||||||||||||||||    
T  31332296 cagtttcatcatctgcttggtcattttaatttatatgcaaagaaattgcaacataatagaagtctccgatttaaagctcattcggcatttttggtattga 31332395  T
Q  197 cactcacttcaatctattcatttttcttagtttgtcaaggcaaactcagtgcggaatcaaaatcgatcttctttatttt 275  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  31332396 cactcacttcagtctattcatttttcttagtttgtcaaggcaaactcagtgcggattcgaaatcgatcttctttatttt 31332474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 31380981 - 31381259
Alignment:
Q  1 cttcatctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggcttt 100  Q
    |||||||||||||| ||||||||||||||||||| | |||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31380981 cttcatctgttgttggactgctttgttatgctttgagctcttccttcaattacctctttggagaatggaatttgttgaaaatatttctctacagtgcttt 31381080  T
Q  101 cagtttcatcatctgcttggtcattttaatttatatgcaaagaaattgcaatattatagaagtctctgatttaaagc----gcggcatttttggtattga 196  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||     ||||||||||||||||||    
T  31381081 cagtttcatcatctgcttggtcattttaatttatattcaaagaaattgcaacattatagaagtctccgatttaaagctcattcggcatttttggtattga 31381180  T
Q  197 cactcacttcaatctattcatttttcttagtttgtcaaggcaaactcagtgcggaatcaaaatcgatcttctttatttt 275  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  31381181 cactcacttcagtctattcatttttcttagtttgtcaaggaaaactcagtgcggattcgaaatcgatcttctttatttt 31381259  T

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Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31317355 - 31317577
Alignment:
Q  1 cttcatctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggcttt 100  Q
    |||||||| ||||| ||||  |||| ||||| |||| |||||| || ||| | ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  31317355 cttcatctcttgttggacttgtttgctatgcattaagctcttcctttaactatctctttggagaatggaatttgttgaaaatatttctttacagcgcttt 31317454  T
Q  101 cagtttcatcatctgcttggtcattttaatttatatgcaaagaaattgcaatattatagaagtctctgatttaaagc----gcggcatttttggtattga 196  Q
    ||||||||||||||||||||| ||     ||||| |||||||||||||||| ||| ||| |||||  |||| |||||     |||||||| |||||||||    
T  31317455 cagtttcatcatctgcttggtgat-----tttatttgcaaagaaattgcaacattctagcagtcttcgattcaaagctcattcggcatttctggtattga 31317549  T
Q  197 cactcacttcaatctattcatttttctt 224  Q
    ||||||||||||||||||| ||||||||    
T  31317550 cactcacttcaatctattcctttttctt 31317577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31368569 - 31368790
Alignment:
Q  1 cttcatctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggcttt 100  Q
    |||||||| ||||| ||||  |||| |||||||||| |||||| || ||| | |||||||||||||| |||||||||||||||||||| ||||| ||| |    
T  31368569 cttcatctcttgttggacttgtttgctatgctttaagctcttcctttaactatctctttggagaatgaaatttgttgaaaatatttctttacagcgctgt 31368668  T
Q  101 cagtttcatcatctgcttggtcattttaatttatatgcaaagaaattgcaatattatagaagtctctgatttaaagc----gcggcatttttggtattga 196  Q
    ||||||||||||||||||||| ||     ||||| |||| ||||||||||| ||| |||||||||| |||| |||||     |||||||| |||||||||    
T  31368669 cagtttcatcatctgcttggtgat-----tttatttgcacagaaattgcaacattctagaagtctccgattcaaagctcattcggcatttctggtattga 31368763  T
Q  197 cactcacttcaatctattcatttttct 223  Q
    ||||||||| ||||||||| |||||||    
T  31368764 cactcactttaatctattcctttttct 31368790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 31284714 - 31284834
Alignment:
Q  1 cttcatctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggcttt 100  Q
    ||||||||| | || ||||||||||||||||| ||| |||||| |||||| | ||||||||||| |||||| || |||| ||| | ||||||||   |||    
T  31284714 cttcatctgctattggactgctttgttatgctctaagctcttccttcaactatctctttggagactggaatctgctgaagataatcctctacagcatttt 31284813  T
Q  101 cagtttcatcatctgcttggt 121  Q
    ||| ||||||||| |||||||    
T  31284814 cagcttcatcatcagcttggt 31284834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 31281430 - 31281557
Alignment:
Q  1 cttcatctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggcttt 100  Q
    ||||| ||||| || |||| |||||||||||||||| |||||| |||||  | ||||||||||| |||||||||||||| || || || ||| | | |||    
T  31281430 cttcagctgttcttggacttctttgttatgctttaagctcttccttcaattatctctttggagattggaatttgttgaagattttcctttacggcgtttt 31281529  T
Q  101 cagtttcatcatctgcttggtcatttta 128  Q
    ||| ||||||||  |||||||| |||||    
T  31281530 cagcttcatcattagcttggtcgtttta 31281557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 31279572 - 31279452
Alignment:
Q  8 tgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagtttc 107  Q
    ||||||| ||||| ||||||||||| | | |||||| |||||| | |||||||||||||||||||| ||||| || || || ||| | | |||||| |||    
T  31279572 tgttgttggactggtttgttatgctctcagctcttccttcaactatctctttggagaatggaatttcttgaagattttcctttacggcgttttcagcttc 31279473  T
Q  108 atcatctgcttggtcatttta 128  Q
    |||||  |||||||| |||||    
T  31279472 atcattagcttggtcgtttta 31279452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 31643974 - 31643862
Alignment:
Q  1 cttcatctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggcttt 100  Q
    |||||||| ||||| |||| |||||||||||| | | |||||| |||||| | || |||||||| |||||| ||||||| || || || ||||| | |||    
T  31643974 cttcatctattgttggactactttgttatgctcttagctcttccttcaactatctatttggagattggaatctgttgaagattttcctttacagcgtttt 31643875  T
Q  101 cagtttcatcatc 113  Q
    |||||||||||||    
T  31643874 cagtttcatcatc 31643862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 31476035 - 31475924
Alignment:
Q  1 cttcatctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggcttt 100  Q
    ||||| ||| |||| ||||||||||||||||| ||| |||||| || ||| | || |||||| | |||||||||||||| ||| |||| ||||  | |||    
T  31476035 cttcagctgctgttggactgctttgttatgctctaagctcttcctttaactatctatttggaaactggaatttgttgaagataattctttacactgtttt 31475936  T
Q  101 cagtttcatcat 112  Q
    ||||||||||||    
T  31475935 cagtttcatcat 31475924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 40843417 - 40843306
Alignment:
Q  1 cttcatctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggcttt 100  Q
    ||||| ||| |||| ||||| ||||||||||| ||| |||||| |||||| | || |||||| | |||||||||||||| ||| |||| ||||  | |||    
T  40843417 cttcagctgctgttggactggtttgttatgctctaagctcttccttcaactatctatttggaaattggaatttgttgaagataattctttacactgtttt 40843318  T
Q  101 cagtttcatcat 112  Q
    ||||||||||||    
T  40843317 cagtttcatcat 40843306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 31317648 - 31317701
Alignment:
Q  222 cttagtttgtcaaggcaaactcagtgcggaatcaaaatcgatcttctttatttt 275  Q
    |||||||||||||||||||||||||| ||| |  |||| |||||||||||||||    
T  31317648 cttagtttgtcaaggcaaactcagtggggatttgaaattgatcttctttatttt 31317701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 31329927 - 31330032
Alignment:
Q  7 ctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagttt 106  Q
    |||||||| ||||||||||  ||||| | |  ||||| |||||| | ||||||||||| ||||||||||| || ||| |||| ||||  | |||||| ||    
T  31329927 ctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatttgttcaagataattctttacactgttttcagctt 31330026  T
Q  107 catcat 112  Q
    ||||||    
T  31330027 catcat 31330032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 31378709 - 31378814
Alignment:
Q  7 ctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagttt 106  Q
    |||||||| ||||||||||  ||||| | |  ||||| |||||| | ||||||||||| ||||||||||| || ||| ||||||| |  | |||||| ||    
T  31378709 ctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatttgttcaagataattctctatactgttttcagctt 31378808  T
Q  107 catcat 112  Q
    ||||||    
T  31378809 catcat 31378814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 31494216 - 31494139
Alignment:
Q  2 ttcatctgttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaa 79  Q
    |||| ||||| || || |||||||||||||| ||| |||||| |||||| | || |||||| | ||||||||||||||    
T  31494216 ttcagctgttattggattgctttgttatgctctaagctcttcgttcaaccatctatttggaaattggaatttgttgaa 31494139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 31416630 - 31416562
Alignment:
Q  11 tgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaa 79  Q
    |||| ||||| ||||||||||| ||| |||||| |||||| | || |||||| | ||||||||||||||    
T  31416630 tgttggactgatttgttatgctctaagctcttctttcaaccatctatttggaaattggaatttgttgaa 31416562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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