View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272_low_18 (Length: 261)
Name: NF5272_low_18
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_low_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 31346397 - 31346137
Alignment:
| Q |
1 |
tttgtatcttacctgttgaagttttcggcatatcttgaaaaatgaccgtttttggagccatgaaatgcggcaaacgatctctacaaaagtttattatttc |
100 |
Q |
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| T |
31346397 |
tttgtatcttacctgttgaagttttcggcatatcttgaaaaatgactgtttttggagccatgaaatgcggcaaacgatctctacaaaagtttattatttc |
31346298 |
T |
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| Q |
101 |
ttgaacatctgcatcaaacccgtctttcaatttcaaatacgcacaaggagtttggccccatagatcatcaggtctagcaacaaccgcagcctctaagacc |
200 |
Q |
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| T |
31346297 |
ttgaacatctgcatcaaacccgtcttttaatttcaaatacgcacaaggagtttggccccatagatcatcaggtctagcaacaaccgcagcctctaagacc |
31346198 |
T |
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| Q |
201 |
gctggatggctatacaaaaccgtttctacctcgattgagctgatgttttctcccccagata |
261 |
Q |
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| T |
31346197 |
gctggatggctatacaaaaccgtttctacctcgattgagctgatgttttctcccccagata |
31346137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 31317702 - 31317442
Alignment:
| Q |
1 |
tttgtatcttacctgttgaagttttcggcatatcttgaaaaatgaccgtttttggagccatgaaatgcggcaaacgatctctacaaaagtttattatttc |
100 |
Q |
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|||||||||||||||||||||| || ||||||||| |||||||||| ||||| ||||||||| | || |||||||| || ||||||||| |||||||| |
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| T |
31317702 |
tttgtatcttacctgttgaagtctttggcatatctagaaaaatgactgttttaggagccatgtagtgaggcaaacgttccctacaaaaggcgattatttc |
31317603 |
T |
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| Q |
101 |
ttgaacatctgcatcaaacccgtctttcaatttcaaatacgcacaaggagtttggccccatagatcatcaggtctagcaacaaccgcagcctctaagacc |
200 |
Q |
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| T |
31317602 |
ttgagcattttgatcaaacccctctttcagcttcaaaaaagcacaaggagtttgaccccaatgatcatctggccgggcaactactgcggcctcaagaact |
31317503 |
T |
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| Q |
201 |
gctggatggctatacaaaaccgtttctacctcgattgagctgatgttttctcccccagata |
261 |
Q |
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|| ||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |
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| T |
31317502 |
gccggatgactatacaaaacagtttctacctcgaccgagctaatgttttctcccccagata |
31317442 |
T |
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