View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5272_low_21 (Length: 249)
Name: NF5272_low_21
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 29280457 - 29280700
Alignment:
| Q |
1 |
ccctccaaatgcaacacaaagcttcttcaaacacttgattccaaattcatacacatcatcaaccttttcattctcaccatctacaccttttcttttttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29280457 |
ccctccaaatgcaacacaaagcttcttcaaacacttgattccaaattcatacacatcatcaaccttttcattctcaccatctacaccttttcttttttct |
29280556 |
T |
|
| Q |
101 |
tcttccgatccacgatcaccaaaaccagcaccattaccgtcctctttaacagacaaaaccaacgacttcatcggaatgataaataacctaaccaaagtct |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29280557 |
tcttccgatccacaatcaccaaaaccagcaccattaccgtcctctttaacagacaaaaccaacgacttcatcggaatgataaataacctaaccaaagtct |
29280656 |
T |
|
| Q |
201 |
catgaggcaaagacatcagcatctgttcccattccttcatctca |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
29280657 |
catgaggcaaagacatcagcatctgttcacattccttcaactca |
29280700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University