View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5272_low_24 (Length: 229)

Name: NF5272_low_24
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5272_low_24
NF5272_low_24
[»] chr8 (3 HSPs)
chr8 (17-115)||(41752253-41752351)
chr8 (126-179)||(41752181-41752234)
chr8 (147-175)||(5179812-5179840)
[»] chr7 (1 HSPs)
chr7 (145-174)||(14671187-14671216)
[»] chr6 (1 HSPs)
chr6 (146-175)||(9923258-9923287)
[»] chr4 (1 HSPs)
chr4 (146-174)||(18635548-18635576)
[»] chr3 (2 HSPs)
chr3 (147-175)||(10513648-10513676)
chr3 (147-175)||(47377363-47377391)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 41752351 - 41752253
Alignment:
Q  17 ggaccaagaacagaaccttcagcgttggcgacactcttcgtatgtgtcaccttaattccattacttgatattgatatttactcggcataatgtttattc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41752351 ggaccaagaacagaaccttcagcgttggcgacactcttcgtatgtgtcaccttaattccattatttgatattgatatttactcggcataatgtttattc 41752253  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 41752234 - 41752181
Alignment:
Q  126 atgttcctgtaagcttaattataaggacaatgcataatatatacaaggttgaac 179  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||    
T  41752234 atgttcccgtaagtttaattataaggacaatgcataatatatgcaaggtcgaac 41752181  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 5179812 - 5179840
Alignment:
Q  147 taaggacaatgcataatatatacaaggtt 175  Q
    |||||||||||||||||||||||||||||    
T  5179812 taaggacaatgcataatatatacaaggtt 5179840  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 174
Target Start/End: Original strand, 14671187 - 14671216
Alignment:
Q  145 tataaggacaatgcataatatatacaaggt 174  Q
    ||||||||||||||||||||||||||||||    
T  14671187 tataaggacaatgcataatatatacaaggt 14671216  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 175
Target Start/End: Original strand, 9923258 - 9923287
Alignment:
Q  146 ataaggacaatgcataatatatacaaggtt 175  Q
    ||||||||||||||||||||||||||||||    
T  9923258 ataaggacaatgcataatatatacaaggtt 9923287  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 18635548 - 18635576
Alignment:
Q  146 ataaggacaatgcataatatatacaaggt 174  Q
    |||||||||||||||||||||||||||||    
T  18635548 ataaggacaatgcataatatatacaaggt 18635576  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 10513648 - 10513676
Alignment:
Q  147 taaggacaatgcataatatatacaaggtt 175  Q
    |||||||||||||||||||||||||||||    
T  10513648 taaggacaatgcataatatatacaaggtt 10513676  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 47377391 - 47377363
Alignment:
Q  147 taaggacaatgcataatatatacaaggtt 175  Q
    |||||||||||||||||||||||||||||    
T  47377391 taaggacaatgcataatatatacaaggtt 47377363  T

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