View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272_low_25 (Length: 218)
Name: NF5272_low_25
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 55869808 - 55870003
Alignment:
| Q |
6 |
gaggagtagcataggtgattggtgcgaagtgt--gtgtgtggtaaattccaggaactgattttgattcatactgattacaatattatagcaggataaaaa |
103 |
Q |
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| T |
55869808 |
gaggattagcacaggtgattggtgcgaagtgtgtgtgtgtggtaaattccgggaactgattttgattcatactgattacaatattatagcaggataaaaa |
55869907 |
T |
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| Q |
104 |
ataaatatacctgctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaag |
199 |
Q |
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| T |
55869908 |
ataaatatacctgctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaag |
55870003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 31536557 - 31536502
Alignment:
| Q |
117 |
ctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggt |
172 |
Q |
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| T |
31536557 |
ctcaaccccataatggtatgtatggcttatattggtcttcctccatgcctcaaggt |
31536502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 34674578 - 34674667
Alignment:
| Q |
110 |
atacctgctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaag |
199 |
Q |
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| T |
34674578 |
atacctgcgcaacccaatgatgatatttattgcttatattggtcctcctccaagcttccaaatcaaaaatgttcatgccataggcccaag |
34674667 |
T |
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