View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272_low_3 (Length: 550)
Name: NF5272_low_3
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 10 - 532
Target Start/End: Complemental strand, 38129350 - 38128826
Alignment:
| Q |
10 |
acatcatcaatacaaagttattaaactcataacccttaaaatcatgctatgcaactactaaccttccaaactagaacccatgtcactagctaaacacctt |
109 |
Q |
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| T |
38129350 |
acatcatcaatacaaagttattaaactcataacccttaaaatcatgctatgcaactactaaccttccaaactagaacccatgtcactagctaaacacctt |
38129251 |
T |
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| Q |
110 |
gcagtcctagcagcttgatccaatgaagcatcaaccaagggatgaaaacatatatgatcaacaacaccaagtctaggatgagttccactatgaacctcaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38129250 |
gcagtcctagcagcttgatccaatgaagcatcaaccaagggatgaaaacatatatgatcaacaacaccaagtctaggatgagttccactatgaacctcaa |
38129151 |
T |
|
| Q |
210 |
aatcaacattatcaaatgcagcctttaccatagccaacacagcatttgtcaaatcacatgatgactttccactagacactgaatccaattcagagacaag |
309 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38129150 |
aatcaacattatcaaatgcagcttttaccatagccaacacagcatttgtcaaatcacatgatgactttccactagacactgaatccaattcagagacaag |
38129051 |
T |
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| Q |
310 |
agtgtaaccaactctattgtaagccacatcttcaaacttgttaattattggtgctaatggaaaaaacttagcagctttttcaattgattccaatgcactc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38129050 |
agtgtaaccaactctattgtaagccacatcttcaaacttgttaattattggtgctaatggaaaaaacttagcagctttttcaattgattccaatgcactc |
38128951 |
T |
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| Q |
410 |
ttgtttctgctttctgatatatatactttgcagcaacctagaattgtcttcaaca--nnnnnnnnngcttttcactttgtaattatacaatgaaactatt |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38128950 |
ttgtttctgctttctgatatatatactttgcagcaacctagaattgtcttcaacattcttttttttgcttttcactttgtaattatacaatgaaactatt |
38128851 |
T |
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| Q |
508 |
caacattgtggaattagacaattgt |
532 |
Q |
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|||| |||||||||||||||||||| |
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| T |
38128850 |
caacgttgtggaattagacaattgt |
38128826 |
T |
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