View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5272_low_5 (Length: 470)
Name: NF5272_low_5
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 34550027 - 34549585
Alignment:
| Q |
19 |
agcacgatcaaaacttatgccaaaaacttgtgtaaaccaaatccgtgagtctttgtaggtaactctgtaaacactctttgagccttgatgcataccctaa |
118 |
Q |
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| T |
34550027 |
agcacgatcaaaacttatgccaaaaacttgtgtaaaccaaatccgtgagcctttgtaggtaactctgtaaacactctttgagccttgatgcctaccctaa |
34549928 |
T |
|
| Q |
119 |
cccttgtgataattaaagtgctgt-----gcccctcacccaaagcacattgaatttgacatccattttgtttaagaaagagtaattgccaaacaactcat |
213 |
Q |
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|||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34549927 |
cccttgtgataattaaagtgttgtggcccggccctcacccaaagcacattgaatttgacatccattttgtttaagaaagagtaattgccaaacaacttgt |
34549828 |
T |
|
| Q |
214 |
tattttgcatgttcctaggtcttacaaatttcagactcattcacaaaaccactctacccctgctttgattccatacctaccaaactcaaggtcttttctg |
313 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34549827 |
tatgttgcatgttcctaggtcttacaaatttcagactcattcactaaaccactctacccctgctttgattccatacctaccaaactcaaggtgttttctg |
34549728 |
T |
|
| Q |
314 |
cgaaggaaccatcaattaagttgggtggggatatccatcaatgtatatgaaacaagtgcgttaatcatcactatagctatcacaagggttagttaatgtg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34549727 |
cgaaggaaccatcaattaagttgggtggggatatccatcaatgtatatgaaacaa-tgcgttaatcatcattatagctatcacaagggttagttaatgtg |
34549629 |
T |
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| Q |
414 |
gttaaatttctcaactgatgtaacgaagttattagttagggtct |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549628 |
gttaaatttctcaactgatgtaacgaagttattagttagggtct |
34549585 |
T |
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