View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5272_low_7 (Length: 466)
Name: NF5272_low_7
Description: NF5272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5272_low_7 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Complemental strand, 43727889 - 43727458
Alignment:
| Q |
14 |
gacatcatctactcaatgtaattatccacctattagaactgtgataaccacttagattattgtcgcaaaaattgtcaaagtgtatttgttcaaataacaa |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43727889 |
gacatcatctactcaatgtaattatccacctattagaactgtgataaccacttagattattgtcgcaaaaattgtcaaagtgtatttgttcaaataacaa |
43727790 |
T |
|
| Q |
114 |
aactgatttaatccacatatacagaatatacaaaagctaaaaggatggtaatttaattctatataccttagtttatcagttggaataacaagatcaagat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43727789 |
aactgatttaatccacatatacagaatatacaaaagctaaaaggatggtaatttaattctatataccttagtttatcagttggaataacaagatcaagat |
43727690 |
T |
|
| Q |
214 |
ctgagtcctttttgtgatggtaaaatcgaggtgagttgttaggtggtaattgaagttttctgttcttataagcagcaatagtgacttgtgcaaaaccagt |
313 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43727689 |
ctgagtcctttttgtgatggtaaaattgaggtgagttcttaggtggtaattgaagttttctgttcttataagcagcagtagtgacttgtgcaaaaccagt |
43727590 |
T |
|
| Q |
314 |
aatcaagctggttctttttgtgatcttgacataaagaggagaagcaagaaagaaacagatagtagataaaagcatgagtgctgctggaacaccaaaacca |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43727589 |
aatcaagctggttctttttgtgatcttgacataaagaggagaagcaagaaagaaacagatagtagataaaagcatgagtgctgctggaacaccaaaacca |
43727490 |
T |
|
| Q |
414 |
attttccaaccaagatgctcttggatatatac |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
43727489 |
attttccaaccaagatgctcttggatatatac |
43727458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 98 - 448
Target Start/End: Complemental strand, 43686578 - 43686229
Alignment:
| Q |
98 |
tttgttcaaataacaaaactgatttaatccacatatacagaatatacaaaagctaaaaggatggtaa-----tttaattctatataccttagtttatcag |
192 |
Q |
| |
|
|||| |||||||||| |||||||||||||| || |||| ||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||| |
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| T |
43686578 |
tttgctcaaataacacaactgatttaatccgtatgtacaaaatatgcaaaagctaaagtgatggtatagtagtttgattctatataccttagtttatcag |
43686479 |
T |
|
| Q |
193 |
ttggaataacaagatcaagatctgagtcctttttgtgatggtaaaatcgaggtgagttgttaggtggtaattgaagttttctgttcttataagcagcaat |
292 |
Q |
| |
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|||||| |||||| || ||||||| |||||||||||||||||| ||||||| | || ||||| ||| |||||||||||||||| | ||||||| |
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| T |
43686478 |
ttggaacaacaag-----ga-ctgagtcttttttgtgatggtaaaattcaggtgaggttttcggtggcaatgaaagttttctgttcttaaaggcagcaac |
43686385 |
T |
|
| Q |
293 |
agtgacttgtgcaaaaccagtaatcaagctggttctttttgtgatcttgacataaagaggagaagcaagaaagaaacagatagtagataaaagcatgagt |
392 |
Q |
| |
|
|| ||||||||||||||||| | |||||||||||||| ||| || || |||||||| ||||||||||||||||| ||| ||| |||| |||||||||| |
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| T |
43686384 |
agatacttgtgcaaaaccagtgagcaagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagt |
43686285 |
T |
|
| Q |
393 |
gctgctggaacaccaaaaccaattttccaaccaagatgctcttggatatatactat |
448 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
43686284 |
gctgctggaacaccaaaaccaattctccaaccaagatgatcttggatatatactat |
43686229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 161 - 448
Target Start/End: Complemental strand, 43713834 - 43713553
Alignment:
| Q |
161 |
gtaatttaattctatataccttagtttatcagttggaataacaagatcaagatctgagtcctttttgtgatggtaaaatcgaggtgagttgttaggtggt |
260 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||| ||| || | |||||||| |
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| T |
43713834 |
gtaatttgattctatataccttagtttatcagttggaataacaaggtc------tgagtctttcttgtgatggtaaaattcaggagatgttttaggtggc |
43713741 |
T |
|
| Q |
261 |
aattgaagttttctgttcttataagcagcaatagtgacttgtgcaaaaccagtaatcaagctggttctttttgtgatcttgacataaagaggagaagcaa |
360 |
Q |
| |
|
||| |||||||||||| ||||| ||||||| || ||||||||||||||||| | |||||||||||||| ||| || || |||||||| |||||||||| |
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| T |
43713740 |
aatgaaagttttctgtttttataggcagcaacagatacttgtgcaaaaccagtgagcaagctggttctttgtgtaattttcacataaagtggagaagcaa |
43713641 |
T |
|
| Q |
361 |
gaaagaaacagatagtagataaaagcatgagtgctgctggaacaccaaaaccaattttccaaccaagatgctcttggatatatactat |
448 |
Q |
| |
|
||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
43713640 |
gaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaaaccaattctccaaccaagatgatcttggatatatactat |
43713553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 169 - 448
Target Start/End: Complemental strand, 43703002 - 43702729
Alignment:
| Q |
169 |
attctatataccttagtttatcagttggaataacaagatcaagatctgagtcctttttgtgatggtaaaatcgaggtgagttgttaggtggtaattgaag |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| || || |||||| |||| |||||||||||| ||| ||| | |||||||| ||| |||| |
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|
| T |
43703002 |
attctatataccttagtttatcagttggaacaacgagttc------tgagtctttttgttgatggtaaaattcaggagaggttttaggtggcaatggaag |
43702909 |
T |
|
| Q |
269 |
ttttctgttcttataagcagcaatagtgacttgtgcaaaaccagtaatcaagctggttctttttgtgatcttgacataaagaggagaagcaagaaagaaa |
368 |
Q |
| |
|
|||||||||||| || ||||||| || ||||||||||||||||| | ||||||||| ||| | | || || |||||||||||||||||||||||||| |
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| T |
43702908 |
ttttctgttcttgtaggcagcaacagatacttgtgcaaaaccagtgaataagctggttttttgtttaattttcacataaagaggagaagcaagaaagaat |
43702809 |
T |
|
| Q |
369 |
cagatagtagataaaagcatgagtgctgctggaacaccaaaaccaattttccaaccaagatgctcttggatatatactat |
448 |
Q |
| |
|
||| ||| |||| |||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
43702808 |
aagacagtggatataagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatatatactat |
43702729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 43734977 - 43734931
Alignment:
| Q |
396 |
gctggaacaccaaaaccaattttccaaccaagatgctcttggatata |
442 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
43734977 |
gctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
43734931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 208 - 448
Target Start/End: Original strand, 24227 - 24467
Alignment:
| Q |
208 |
caagatctgagtcctttttgtgatggtaaaatcgaggtgagttgttaggtggtaattgaagttttctgttcttataagcagcaatagtgacttgtgcaaa |
307 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| ||||||| || ||||| |||||| |||||||||||| ||| | | ||||| ||| ||||| ||||| |
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|
| T |
24227 |
caagatttgagtccttgttgtgatggtaaaattgaggtgaatttttaggcggtaatgtaagttttctgttgttacaggaagcaacagttacttgcgcaaa |
24326 |
T |
|
| Q |
308 |
accagtaatcaagctggttctttttgtgatcttgacataaagaggagaagcaagaaagaaacagatagtagataaaagcatgagtgctgctggaacacca |
407 |
Q |
| |
|
|| || | |||| ||||||||||| ||||| |||||||||||||||||||||||||| | | || ||||||| |||||||||||||||||| ||| |
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|
| T |
24327 |
actagcgaacaagttggttcttttttgaatctttacataaagaggagaagcaagaaagaataacaatgtggataaaaacatgagtgctgctggaactcca |
24426 |
T |
|
| Q |
408 |
aaaccaattttccaaccaagatgctcttggatatatactat |
448 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24427 |
aaaccaattttccaaccaagatgatcttggatatatactat |
24467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 208 - 448
Target Start/End: Complemental strand, 25273495 - 25273255
Alignment:
| Q |
208 |
caagatctgagtcctttttgtgatggtaaaatcgaggtgagttgttaggtggtaattgaagttttctgttcttataagcagcaatagtgacttgtgcaaa |
307 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| || ||||| |||||| ||||||||| ||| |||| | ||||| | ||||| |||| |
|
|
| T |
25273495 |
caagatctgagtccttgttgtgatggtaaaattgaggtgaatttttaggcggtaatggaagttttcggttgctataggaagcaacgattacttgcccaaa |
25273396 |
T |
|
| Q |
308 |
accagtaatcaagctggttctttttgtgatcttgacataaagaggagaagcaagaaagaaacagatagtagataaaagcatgagtgctgctggaacacca |
407 |
Q |
| |
|
|| || | |||| ||||||||||| ||||| |||||||||||||||||||||||||| | | || || |||| |||||||||||||||||| ||| |
|
|
| T |
25273395 |
actagcgaacaagttggttcttttttgaatctttacataaagaggagaagcaagaaagaataacagtgtggacaaaaacatgagtgctgctggaactcca |
25273296 |
T |
|
| Q |
408 |
aaaccaattttccaaccaagatgctcttggatatatactat |
448 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25273295 |
aaaccaattttccaaccaagatgatcttggatatatactat |
25273255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 337 - 448
Target Start/End: Complemental strand, 2689940 - 2689829
Alignment:
| Q |
337 |
tcttgacataaagaggagaagcaagaaagaaacagatagtagataaaagcatgagtgctgctggaacaccaaaaccaattttccaaccaagatgctcttg |
436 |
Q |
| |
|
|||| |||||||| |||||||||||||| || ||| ||| || || | ||| ||||||||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
2689940 |
tctttacataaagtggagaagcaagaaaaaagaagaaagtggaaaagaacataagtgctgctggaacaccaaaaccaagtttccatccaagatgatcttg |
2689841 |
T |
|
| Q |
437 |
gatatatactat |
448 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2689840 |
gatatatactat |
2689829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 8467064 - 8467136
Alignment:
| Q |
20 |
atctactcaatgtaattatccacctattagaactgtgataaccacttagattattgtcgcaaaaattgtcaaa |
92 |
Q |
| |
|
||||||| |||||||||| | | |||| |||||||| |||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
8467064 |
atctactaaatgtaattaactatctatctgaactgtgttaaccacttacattgttgtcgcaaaaatcgtcaaa |
8467136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 36081924 - 36081824
Alignment:
| Q |
20 |
atctactcaatgtaattatccacctattagaactgtgataaccacttagattattgtcgcaaaaattgtcaaagtgtatttgttcaaataacaaaactga |
119 |
Q |
| |
|
||||||| || ||||||| |||||| | |||||||| |||||||||||||| |||| ||||| |||||||| | || || |||||||| || |||||| |
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|
| T |
36081924 |
atctactgaacgtaattaatcacctacttgaactgtgttaaccacttagattgttgttgcaaatgttgtcaaattttagttattcaaatagcacaactga |
36081825 |
T |
|
| Q |
120 |
t |
120 |
Q |
| |
|
| |
|
|
| T |
36081824 |
t |
36081824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 6798232 - 6798157
Alignment:
| Q |
32 |
taattatccacctattagaactgtgataaccacttagattattgtcgcaaaaattgtcaaagtgtatttgttcaaa |
107 |
Q |
| |
|
|||||| ||||||||| ||||||| ||| || ||||||| ||||||||||| |||||||| | || ||||||||| |
|
|
| T |
6798232 |
taattaaccacctatttcaactgtgttaatcatttagattgttgtcgcaaaagttgtcaaattttagttgttcaaa |
6798157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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